The scope viewer provides a simple interface to consult metabolic graph such as the scope graph outputted by RetroPath2.0 and RetroPath3.0.
RetroPath tools are retrosynthesis tools to build reaction networks from a set of source compounds to a set of sink compounds. More details:
- RetroPath2.0 at https://www.myexperiment.org/workflows/4987.html
- RetroPath3.0 at https://github.com/brsynth/RetroPath3
Just download the complete repository.
- Open
scope_viewer.html
in your favorite web browser (e.g. Firefox, Safari, ..) - Load the scope network
- load any
.json
scope file using the "Browse to JSON" input - example of scope file is provided in the
example
folder
- load any
- Load the depiction of compounds (optional)
- for better visualization experience, load
.svg
depiction of compounds using the "Browse to SVGs" input - example of
.svg
depictions are provided in theexample
folder - to load all depictions at once, browse to the folder containing
.svg
files, then select all files using [CTRL] + [A] or [CMD] + [A] keyboard shortcuts
- for better visualization experience, load
- In case the scope viewer become unresponsive -- which is possible when trying to load a second scope file -- refresh the HTML page.
- 20190926: adding compatibility with RetroPath3.0 (optional chemical score)
- 20170524: first release for RetroPath2.0