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  1. LegNet LegNet Public

    accurate prediction of promoter activity and variant effects from massive parallel reporter assays

    Jupyter Notebook 35 3

  2. vigg_ribonanza vigg_ribonanza Public

    Source code of the Stanford Ribonanza RNA Folding first place solution

    Python 25 3

  3. MixALime MixALime Public

    Mixture Models for Allelic Imbalance Estimation

    Python 8 1

  4. human_legnet human_legnet Public

    Python 8 1

  5. motif_benchmarking_data motif_benchmarking_data Public

    Motif benchmarking supplementary data for paper submission

    R 4

  6. ArmNet ArmNet Public

    Python 4

Repositories

Showing 10 of 41 repositories
  • MARADONER Public

    Motif Response Analysis Done Right

    Python 0 0 0 0 Updated Mar 5, 2025
  • MixALime Public

    Mixture Models for Allelic Imbalance Estimation

    Python 8 1 0 0 Updated Feb 24, 2025
  • ASB-frontend Public
    TypeScript 0 1 0 0 Updated Feb 24, 2025
  • hocomoco_webapp Public

    Web-site for HOCOMOCO collection of transcription factor binding sites motifs.

    Ruby 0 0 0 6 Updated Feb 20, 2025
  • opera_webface Public

    Webface for OperaHouse (included inside)

    Ruby 0 MIT 0 0 6 Updated Feb 17, 2025
  • epifactors_webapp Public

    Web-site for EpiFactors database of epigenetic factors, corresponding genes and products.

    Ruby 0 1 0 2 Updated Jan 15, 2025
  • ArmNet Public
    Python 4 MIT 0 0 0 Updated Jan 11, 2025
  • parade Public
    Jupyter Notebook 2 2 0 0 Updated Jan 9, 2025
  • pasio Public

    Pasio is a tool for denoising profiles coming from DNA-sequencing data like ATAC-seq, DNA-seq or ChIP-seq.

    Python 1 2 0 1 Updated Dec 30, 2024
  • MEX-ArChIPelago Public

    This repository allows reproducing the MEX-ArChIPelago analysis

    Jupyter Notebook 0 0 0 0 Updated Nov 29, 2024
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