Closed
Description
The file that reads Ok, but slowly with read.table is output from a PK/PD program, truncated. Quite sure I missed some settings.
# Sample file can be downloaded from
# http://www.menne-biomed.de/uni/nonmem.txt
# This is output from NONMEM (PK/PD program)
# The full file is about 10000 lines and
# needs 60 seconds on my computer to load with read.table
str(read.table("nonmem.txt", header=TRUE)) # Fine, slow for large
library(readr)
str(read_table("nonmem.txt")) # Fast, but not correct
str(read_table("nonmem.txt", col_names=FALSE ,skip=1)) # Fast, no column names
library(data.table)
str(fread("nonmem.txt")) # error
str(fread("nonmem.txt"),skip=1, header=FALSE ) # error
sessionInfo()
R version 3.1.3 (2015-03-09)
Platform: i386-w64-mingw32/i386 (32-bit)
Running under: Windows 7 x64 (build 7601) Service Pack 1
locale:
[1] LC_COLLATE=German_Germany.1252 LC_CTYPE=German_Germany.1252
[3] LC_MONETARY=German_Germany.1252 LC_NUMERIC=C
[5] LC_TIME=German_Germany.1252
attached base packages:
[1] stats graphics grDevices utils datasets methods base
other attached packages:
[1] data.table_1.9.5 readr_0.1.0.9000 testthat_0.9.1.9001
loaded via a namespace (and not attached):
[1] chron_2.3-45 fortunes_1.5-2 Rcpp_0.11.5.1 tools_3.1.3