CHANGES IN VERSION 1.0.5 ------------------------ o Improved the installation guidelines from GitHub o Vignette now in Markdown for a better integration in GitHub o Added the normalizationMethod parameter to the edgeR pipeline to allow a RLE or upperquartile normalization CHANGES IN VERSION 1.0.4 ------------------------ o Order counts according to features names in loadCountData() o Small modifications in the DESeq2 report due to the changes in version 1.0.3 CHANGES IN VERSION 1.0.3 ------------------------ o If use of DESeq2, the cooksCutoff parameter is now TRUE or FALSE (instead of NULL, Inf or a numeric) CHANGES IN VERSION 1.0.2 ------------------------ o Added volcano plots to the HTML reports CHANGES IN VERSION 1.0.0 ------------------------ o First version publicly available on GitHub CHANGES IN VERSION 0.99.6 ------------------------- o Added batch argument to loadTargetFile() o Simplified the R script templates with wrappers CHANGES IN VERSION 0.99.5 ------------------------- o Now check the format/validity of the parameters at the beginning of the script o Added functions checkParameters.DESeq2() and checkParameters.edgeR() o Added small precisions in the vignette CHANGES IN VERSION 0.99.4 ------------------------- o First version of the package