Switch to Keras v3 save format for nn_ensemble #730

osma · 2023-08-16T08:17:56Z

With the TensorFlow 2.13 update in PR #726, these warnings are shown:

UserWarning: You are saving your model as an HDF5 file via `model.save()`. This file format is considered legacy. We recommend using instead the native Keras format, e.g. `model.save('my_model.keras')

This PR addresses the problem by switching to the new Keras v3 (.keras) format for saving the trained nn_ensemble models.

Keras imports are modernized so that they follow current conventions (no need to use tensorflow.keras, and switched to the new keras.saving submodule).

Note that this PR branch includes all the commits from PR #726.

Old method trial.suggest_uniform() is deprecated

codecov · 2023-08-16T08:21:40Z

Codecov Report

Patch coverage: 100.00% and no project coverage change.

Comparison is base (40cc2fd) 99.67% compared to head (4886e08) 99.67%.
Report is 4 commits behind head on main.

❗ Current head 4886e08 differs from pull request most recent head 1c8bc48. Consider uploading reports for the commit 1c8bc48 to get more accurate results

Additional details and impacted files

@@           Coverage Diff           @@
##             main     #730   +/-   ##
=======================================
  Coverage   99.67%   99.67%           
=======================================
  Files          89       89           
  Lines        6397     6420   +23     
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+ Hits         6376     6399   +23     
  Misses         21       21

Files Changed	Coverage Δ
annif/backend/ensemble.py	`100.00% <ø> (ø)`
annif/backend/nn_ensemble.py	`100.00% <100.00%> (ø)`
annif/backend/svc.py	`100.00% <100.00%> (ø)`
tests/test_backend_nn_ensemble.py	`100.00% <100.00%> (ø)`