@mike-wendt questions about the new setup -

1. The CUDA 10.1 py 3.6 jobs seems to failing because of a numpy installation error. Any chance the python in the conda env has numpy already?
   https://gpuci.gpuopenanalytics.com/blue/organizations/jenkins/gpuCI-private%2Fclara-genomics-analysis%2Fprb%2Fclara-genomics-analysis-cpu-build/detail/clara-genomics-analysis-cpu-build/869/pipeline

2. The CUDA 9.0 GPU jobs seems to be using CUDA 10.1 based on the logs for cmake. Could it be that the symlink fr /usr/local/cuda in that image is pointing to /usr/local/cuda-10.1 instead of /usr/local/cuda-9.0?

-- Using CUDA 10.1 from /usr/local/cuda
-- Using CUDA 10.1 from /usr/local/cuda

3. Are these new test targets only enabled for merges to master branch? Or all jobs for ClaraGenomicsAnalysis?

1. The CUDA 10.1 py 3.6 jobs seems to failing because of a numpy installation error. Any chance the python in the conda env has numpy already?
   https://gpuci.gpuopenanalytics.com/blue/organizations/jenkins/gpuCI-private%2Fclara-genomics-analysis%2Fprb%2Fclara-genomics-analysis-cpu-build/detail/clara-genomics-analysis-cpu-build/869/pipeline

Yes the conda environment has numpy already.

2. The CUDA 9.0 GPU jobs seems to be using CUDA 10.1 based on the logs for cmake. Could it be that the symlink fr /usr/local/cuda in that image is pointing to /usr/local/cuda-10.1 instead of /usr/local/cuda-9.0?

Are you sure? Can you point to the logs?
I see this one and has the right CUDA version in cmake: https://gpuci.gpuopenanalytics.com/blue/organizations/jenkins/gpuCI-private%2Fclara-genomics-analysis%2Fprb%2Fclara-genomics-analysis-cpu-build/detail/clara-genomics-analysis-cpu-build/867/pipeline

3. Are these new test targets only enabled for merges to master branch? Or all jobs for ClaraGenomicsAnalysis?

Triggering the CUDA 9.0 & 10.1 is manual right now. We want to iron out the builds before enabling it globally.

@raydouglass

Are you sure? Can you point to the logs?

https://gpuci.gpuopenanalytics.com/blue/rest/organizations/jenkins/pipelines/gpuCI-private/pipelines/clara-genomics-analysis/pipelines/prb/pipelines/clara-genomics-analysis-gpu-build/runs/431/log/?start=0

If you look at the CMake logs, it says using CUDA 10.1

Triggering the CUDA 9.0 & 10.1 is manual right now. We want to iron out the builds before enabling it globally.

Perfect, just wanted to make sure that out other merges won't be blocked till these issues are ironed out.

@raydouglass @mike-wendt made changes to support CUDA 9.0. can you re-trigger this PR with the different CUDA 9.0 and CUDA 10.1 jobs? I realized that what we'll actually need is CUDA 9.0, CUDA 9.2 and CUDA 10.1 ideally

rerun tests

New set of tests are passing. Failing tests are old status checks that can't be removed.