segmentation fault on julia 1.11 when using CondaPkg #248
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Description
I am unable to get the new JuliaCall 0.17.6 to work on julia 1.11. I am loading and calling it from RCall from a running julia session.
Here a minimal reproducible example. First setup a new julia Project by running julia --project=. in a new folder. Then run
ENV["JULIA_CONDAPKG_OPENSSL_VERSION"] = "ignore" # important to ensure version 0.17.6 is actually loaded
copy!(LOAD_PATH, ["@", "@stdlib"]) # making sure no sideeffects change your setup
using CondaPkg
CondaPkg.add("r-base")
CondaPkg.add("r-juliacall")
using RCall # RCall needs to be installed in order to set preference, will fail though if no R can be found
# make RCall use CondaPkg
# taken from https://juliainterop.github.io/RCall.jl/stable/installation/#(Experimental)-Usage-with-CondaPkg
using Libdl
using CondaPkg
using Preferences
using UUIDs
const RCALL_UUID = UUID("6f49c342-dc21-5d91-9882-a32aef131414")
CondaPkg.add("r")
target_rhome = joinpath(CondaPkg.envdir(), "lib", "R")
if Sys.iswindows()
target_libr = joinpath(target_rhome, "bin", Sys.WORD_SIZE==64 ? "x64" : "i386", "R.dll")
else
target_libr = joinpath(target_rhome, "lib", "libR.$(Libdl.dlext)")
end
set_preferences!(RCALL_UUID, "Rhome" => target_rhome, "libR" => target_libr)
restart julia for RCall to recompile and then run
ENV["JULIA_CONDAPKG_OPENSSL_VERSION"] = "ignore"
copy!(LOAD_PATH, ["@", "@stdlib"]) # making sure no sideeffects change your setup
using RCall
RCall.reval("library(JuliaCall)")
RCall.reval("julia_setup(installJulia=TRUE)")which fails with the following output on my system (nixos, julia 1.11 installed via juliaup)
[106475] signal 11 (1): Segmentation fault
in expression starting at REPL[3]:1
unknown function (ip: (nil))
Allocations: 5273857 (Pool: 5273476; Big: 381); GC: 6
[1] 106475 segmentation fault (core dumped) julia --project=.
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