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  1. StrainEvolve_TemporalNMF StrainEvolve_TemporalNMF Public

    Use Temporal Non-negative Matrix factorization to study strain evolution

    Jupyter Notebook

  2. MixtureDetection_KNN MixtureDetection_KNN Public

    Identify WGS samples infected with multiple strains of slow evolving pathogens

    R

  3. WASP WASP Public

    WASP: A Workflow for Antibody Sequencing Profiling

    Jupyter Notebook

  4. RNA-seq-InfluenzaNP-CD8-T-cells RNA-seq-InfluenzaNP-CD8-T-cells Public

    Jupyter Notebook

  5. GISAID_metadata_explorer GISAID_metadata_explorer Public

    HTML

  6. ggcovid ggcovid Public

    visualizations for BCFB SARS-covid-2 sequencing pipelines

    HTML