zhang_nature_2021 Code used to produce figures in PMID Dependencies bwtool bedtools R libraries Figure 1 190909_melanoma_salmon_git.R Figure 3 210522_yummer_TE_git.R Figure 4 210520_signal_correlation_git.R 210518_overlaps_H3K9me3_KDM5B_SETDB1_git.R 210513_atac_diffbind_sizefactors_git.R Figure eF1 210521_rna_git.R Figure eF4 210331_process_exonerate_git.R Figure eF6 210527_yummer_heatmaps_top10up_git.R 210522_1445_TE_git.R 210524_1445_heatmaps_git.R 210518_overlaps_KDM5B_SETDB1_git.R Figure eF7 210519_metagenes_git.R 210513_atac_diffbind_sizefactors_git.R Figure eF10 190909_melanoma_salmon_git.R