Include updated graphml files.

web-archive-group · Jun 12, 2017 · 604d31e · 604d31e
1 parent 296751d
commit 604d31e
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Showing 4 changed files with 45 additions and 109 deletions.
diff --git a/.py34/bin/activate b/.py34/bin/activate
diff --git a/.py34/bin/activate b/.py34/bin/activate
@@ -0,0 +1 @@
+/opt/anaconda/anaconda3/bin/activate
diff --git a/.py34/bin/conda b/.py34/bin/conda
@@ -0,0 +1 @@
+/opt/anaconda/anaconda3/bin/conda
diff --git a/.py34/bin/deactivate b/.py34/bin/deactivate
@@ -0,0 +1 @@
+/opt/anaconda/anaconda3/bin/deactivate
diff --git a/descriptor/create_graphs_in_R.ipynb b/descriptor/create_graphs_in_R.ipynb
@@ -73,16 +73,28 @@
   },
   {
    "cell_type": "code",
-   "execution_count": 3,
+   "execution_count": 6,
    "metadata": {},
    "outputs": [
     {
      "name": "stderr",
      "output_type": "stream",
      "text": [
-      "Warning message:\n",
-      "“closing unused connection 4 (/data/links/ALBERTA_ottawa_shooting_october_2014-links.txt)”Warning message in (function (..., deparse.level = 1) :\n",
-      "“number of columns of result is not a multiple of vector length (arg 1)”"
+      "Warning message in file(filepath, \"r\"):\n",
+      "“cannot open file '/data/links/-links.txt': No such file or directory”"
+     ]
+    },
+    {
+     "ename": "ERROR",
+     "evalue": "Error in file(filepath, \"r\"): cannot open the connection\n",
+     "output_type": "error",
+     "traceback": [
+      "Error in file(filepath, \"r\"): cannot open the connection\nTraceback:\n",
+      "1. graph.data.frame(unique(processFile(filename2)[c(\"from\", \"to\")]), \n .     directed = TRUE)",
+      "2. as.data.frame(d)",
+      "3. unique(processFile(filename2)[c(\"from\", \"to\")])",
+      "4. processFile(filename2)",
+      "5. file(filepath, \"r\")   # at line 4 of file <text>"
      ]
     }
    ],
@@ -93,11 +105,11 @@
     "\n",
     "\n",
     "# Change the following file to the \n",
-    "file = 'ALBERTA_ottawa_shooting_october_2014'\n",
+    "file = 'ALBERTA_edmonton_public_library'\n",
     "#       ^^^^^^^^^^^^^^^^^^^^^^^^^^  <- Change to the file name you want. Leave out \"-links.txt\"\n",
     "\n",
     "suffix = '-links.txt'\n",
-    "file2 = 'ALBERTA_prairie_provinces'\n",
+    "#file2 = ''\n",
     "#       ^^^^^^^^^^^^^^^^^^^^^^^^^^  <- Change to the file name you want. Leave out \"-links.txt\"\n",
     "\n",
     "\n",
@@ -137,33 +149,25 @@
   },
   {
    "cell_type": "code",
-   "execution_count": null,
+   "execution_count": 5,
    "metadata": {},
    "outputs": [
-    {
-     "name": "stderr",
-     "output_type": "stream",
-     "text": [
-      "Warning message:\n",
-      "“closing unused connection 5 (/data/links/ALBERTA_prairie_provinces-links.txt)”"
-     ]
-    },
     {
      "name": "stdout",
      "output_type": "stream",
      "text": [
-      "[1] \"Average In-degree: 1.63265306122449\"\n",
-      "[1] \"Average Out-degree: 1.63265306122449\"\n",
-      "[1] \"Average Degree: 3.26530612244898\"\n",
-      "[1] \"Average In-degree: 1.49132964544699\"\n",
-      "[1] \"Average Out-degree: 1.49132964544699\"\n",
-      "[1] \"Average Degree: 2.98265929089398\"\n"
+      "[1] \"Average In-degree: 1.15150736003085\"\n",
+      "[1] \"Average Out-degree: 1.15150736003085\"\n",
+      "[1] \"Average Degree: 2.30301472006171\"\n",
+      "[1] \"Average In-degree: 1.4903156384505\"\n",
+      "[1] \"Average Out-degree: 1.4903156384505\"\n",
+      "[1] \"Average Degree: 2.980631276901\"\n"
      ]
     }
    ],
    "source": [
     "# Change this to whatever graph_file you want.\n",
-    "graph_file <- graph_file\n",
+    "# graph_file <- graph_file\n",
     "#             ^^^^^^^^^^^  <- Change to graph_file or graph_file2 as required.\n",
     "\n",
     "#Create vectors for strongly connected components, degree etc.\n",
@@ -258,7 +262,7 @@
   },
   {
    "cell_type": "code",
-   "execution_count": 6,
+   "execution_count": null,
    "metadata": {
     "collapsed": true
    },
@@ -271,7 +275,7 @@
   },
   {
    "cell_type": "code",
-   "execution_count": 14,
+   "execution_count": 7,
    "metadata": {
     "scrolled": true
    },
@@ -339,7 +343,7 @@
   },
   {
    "cell_type": "code",
-   "execution_count": 15,
+   "execution_count": 8,
    "metadata": {
     "collapsed": true
    },
@@ -356,11 +360,18 @@
   },
   {
    "cell_type": "code",
-   "execution_count": 4,
-   "metadata": {
-    "collapsed": true
-   },
-   "outputs": [],
+   "execution_count": 5,
+   "metadata": {},
+   "outputs": [
+    {
+     "name": "stderr",
+     "output_type": "stream",
+     "text": [
+      "Warning message:\n",
+      "“closing unused connection 5 (/data/links/ALBERTA_prairie_provinces-links.txt)”"
+     ]
+    }
+   ],
    "source": [
     "# Write the graphml\n",
     "write.graph (graph_file, savename, format='graphml')\n",
@@ -370,7 +381,7 @@
   },
   {
    "cell_type": "code",
-   "execution_count": 16,
+   "execution_count": 9,
    "metadata": {
     "collapsed": true
    },