Package: curatedMetagenomicAnalyses

Title: Analyses using curatedMetagenomicData

Version: 0.4.0

Authors@R:

c(person(given = "Levi", family = "Waldron", role = "aut"),

person(given = "Paolo", family = "Manghi", role = "aut"),

person(given = "Davide", family = "Galzato", role = "aut"),

person(given = "Lucas", family = "Schiffer", role = "aut"),

person(given = "Jennifer", family = "Wokaty", role = c("ctb", "cre"),

email = "jennifer.wokaty@sph.cuny.edu"))

Description: This package is a home for significant analyses using curatedMetagenomicData.

License: CC BY 4.0

Encoding: UTF-8

LazyData: true

Roxygen: list(markdown = TRUE)

RoxygenNote: 7.1.2

Imports:

curatedMetagenomicData,

dplyr,

meta

Suggests:

ANCOMBC,

BiocStyle,

DT,

forcats,

ggplot2,

ggrepel,

ggsignif,

gtsummary,

hrbrthemes,

kableExtra,

knitr,

mia,

RefManageR,

rmarkdown,

scater,

sessioninfo,

SIAMCAT,

snakecase,

stringr,

table1,

tibble,

tidyr,

tidyverse,

TreeSummarizedExperiment,

uwot,

vegan

VignetteBuilder: knitr

biocViews:

ExperimentHub,

MicrobiomeData,

ReproducibleResearch

URL: https://github.com/waldronlab/curatedMetagenomicAnalyses