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Commits on Dec 13, 2024

• Add filesize sniffing and parallelize importing on jobs (DataBiosphere#5133)

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Commits on Dec 12, 2024

• Fix Integration Tests (DataBiosphere#5185)

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Commits on Dec 5, 2024

• Move rebase-strategy into each updates element (DataBiosphere#5176)

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Commits on Dec 2, 2024

• Fix bug in coordination dir override (DataBiosphere#5153)

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• workDir and jobStore now default to (shared) tmp-outdir-prefix (DataBiosphere#5154)

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Commits on Nov 27, 2024

• Test smarter, not harder (DataBiosphere#5166)

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Commits on Nov 22, 2024

• Add FTP support to jobstores (DataBiosphere#5142)

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Commits on Nov 20, 2024

• Make file job store stats and logging files flow one way, and never show partially written logs (DataBiosphere#5141)

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Commits on Nov 15, 2024

• Update flask requirement from <3,>=2.0 to >=2.0,<4 (DataBiosphere#5157)

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• Don't set no_listing in builder init for Workflows (DataBiosphere#5149)

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Commits on Nov 14, 2024

• Fix CWL Workflow Slurm memory test (DataBiosphere#5151)

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• Bump cwltool from 3.1.20241024121129 to 3.1.20241112140730 (DataBiosphere#5155)

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• set minimum version of types-psutil to match previous type update (DataBiosphere#5156)

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Commits on Nov 13, 2024

• Update to Python 3.13 (DataBiosphere#5145)

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• Add support for running Dockstore page URLs and TRS IDs (DataBiosphere#5102)

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Commits on Nov 5, 2024

• Add WDL unit tests to CI (DataBiosphere#5110)

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Commits on Nov 1, 2024

• Fix unexecuted CWL jobs with dynamic requirements failing on missing inputs (DataBiosphere#5136)

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Commits on Oct 31, 2024

• Don't error on collision (DataBiosphere#5138)

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Commits on Oct 30, 2024

• Update pytest-cov requirement from <6,>=2.12.1 to >=2.12.1,<7 (DataBiosphere#5144)

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Commits on Oct 28, 2024

• Support WDL call caching (DataBiosphere#5105)

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Commits on Oct 25, 2024

• Bump cwltool from 3.1.20241007082533 to 3.1.20241024121129 (DataBiosphere#5139)

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Commits on Oct 24, 2024

• Deal with normalized paths when importing from a WDL JSON file (DataBiosphere#5121)

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Commits on Oct 23, 2024

• Bump mypy from 1.12.1 to 1.13.0 (DataBiosphere#5132)

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• Merge pull request DataBiosphere#5128 from DataBiosphere/py39-upgrade

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Commits on Oct 22, 2024

• Merge master into py39-upgrade

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• cwl slurm memory test: simplify (DataBiosphere#5127)

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• Merge master into py39-upgrade

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• Update types-boto requirement (DataBiosphere#5129)

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• Merge master into py39-upgrade

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• Bump mypy from 1.12.0 to 1.12.1 (DataBiosphere#5131)

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• fix import location

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• undo one TypeDict upgrade to fix the docs

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• add some noisy commits to the git blame ignore list

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• type cleanup

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• make format

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