added data folder with Darwin Core names

vijaybarve · Sep 10, 2011 · f47a23e · f47a23e
1 parent d5f2f96
commit f47a23e
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Showing 3 changed files with 13 additions and 4 deletions.
diff --git a/Data/darwincorenames.csv b/Data/darwincorenames.csv
@@ -0,0 +1 @@
+name,short_nameacceptednameusage,anuacceptednameusageid,anuidaccessrights,arassociatedmedia,amassociatedoccurrences,aoassociatedreferences,arassociatedsequences,asassociatedtaxa,atbasisofrecord,brbed,bdbehavior,bbibliographiccitation,bccatalognumber,catclass,clcollectioncode,cccollectionid,cidcontinent,ctcoordinateprecision,cpcoordinateuncertaintyinmeters,cucountry,cncountrycode,cnccounty,codatageneralizations,dgdatasetid,diddatasetname,dndateidentified,diday,ddecimallatitude,dlatdecimallongitude,dlngdisposition,dspdynamicproperties,dpearliestageorloweststage,eageearliesteonorlowesteonothem,eeonearliestepochorlowestseries,eepearliesteraorlowesterathem,eeraearliestperiodorlowestsystem,ependdayofyear,edyestablishmentmeans,emeventdate,edeventid,eideventremarks,ereventtime,etfamily,fmfieldnotes,fntfieldnumber,fnmfootprintspatialfit,fpsffootprintsrs,fpsfootprintwkt,fpformation,frmgenus,ggeodeticdatum,gdgeologicalcontextid,gidgeoreferencedby,gbgeoreferenceprotocol,gpgeoreferenceremarks,grgeoreferencesources,gsgeoreferenceverificationstatus,gvsgroup,grphabitat,hhigherclassification,hchighergeography,hghighergeographyid,hgidhighestbiostratigraphiczone,hbzidentificationid,idididentificationqualifier,iqidentificationreferences,irfidentificationremarks,irmidentifiedby,ibindividualcount,icindividualid,indidinformationwithheld,iwinfraspecificepithet,iseinstitutioncode,icinstitutionid,iidisland,iislandgroup,igkingdom,klanguage,lnlatestageorhigheststage,lagelatesteonorhighesteonothem,leonlatestepochorhighestseries,leplatesteraorhighesterathem,leralatestperiodorhighestsystem,lplifestage,lslithostratigraphicterms,ltlocality,llocationaccordingto,lcatlocationid,lidlocationremarks,lrlowestbiostratigraphiczone,lbzmaximumdepthinmeters,mxdmaximumdistanceabovesurfaceinmeters,mxamaximumelevationinmeters,mxemember,memminimumdepthinmeters,mndminimumdistanceabovesurfaceinmeters,mnaminimumelevationinmeters,mnemodified,mdmonth,mmunicipality,mnnameaccordingto,natnameaccordingtoid,natidnamepublishedin,npnamepublishedinid,npidnomenclaturalcode,ncnomenclaturalstatus,nsoccurrencedetails,odoccurrenceid,oidoccurrenceremarks,oroccurrencestatus,osorder,ordoriginalnameusage,onuoriginalnameusageid,onuidothercatalognumbers,ocnownerinstitutioncode,oicparentnameusage,pnuparentnameusageid,pnuidphylum,phpointradiusspatialfit,prsfpreparations,ppreviousidentifications,pirecordedby,rbrecordnumber,rnreproductivecondition,rcrights,rrightsholder,rhsamplingeffort,smesamplingprotocol,smpscientificname,snscientificnameauthorship,snascientificnameid,sidsex,sxspecificepithet,sestartdayofyear,sdystateprovince,spsubgenus,sgtaxonconceptid,tcidtaxonid,tidtaxonomicstatus,tstaxonrank,trtaxonremarks,trmtype,ttypestatus,tsverbatimcoordinates,vcverbatimcoordinatesystem,vcsverbatimdepth,vdverbatimelevation,veverbatimeventdate,vedverbatimlatitude,vlatverbatimlocality,vlverbatimlongitude,vlngverbatimsrs,vsverbatimtaxonrank,vtrvernacularname,vnwaterbody,wyear,y

diff --git a/Data/dcnames.R b/Data/dcnames.R
@@ -0,0 +1,7 @@
+# darwincorenames.R
+# Reads in the data so that it can be loaded with data()
+dcnames <- function() {
+  read.csv("darwincorenames.csv")
+}
+
+# E.g., dcnames()
diff --git a/R/vertsearch.R b/R/vertsearch.R
@@ -3,10 +3,10 @@
 vertsearch <- 
 # Args:
 #   cl: taxonomic search term (character)
-#   sp: state (character)
+#   sp: state or province (character)
 #   limit: search return limit (numeric)
 # Examples:
-#   vertsearch("aves", "california", 1)
+#   vertsearch("aves", "california", 10)
 # Returns:
 #   dataframe of search results OR prints "no search match" if no matches
 
@@ -26,8 +26,9 @@ function(cl = NA, sp = NA, limit = NA,
     .params = args,
     ...,
     curl = curl)
-#   out <- fromJSON(I(temp))
-  return(temp)
+  out <- fromJSON(I(temp))
+  dfout <- ldply(out$records, function(x) as.data.frame(x))
+  return(dfout)
 }
 
 # http://canary.vert-net.appspot.com/api/search?cl=aves&sp=california&limit=1
Original file line number	Diff line number	Diff line change
		@@ -0,0 +1 @@
		name,short_nameacceptednameusage,anuacceptednameusageid,anuidaccessrights,arassociatedmedia,amassociatedoccurrences,aoassociatedreferences,arassociatedsequences,asassociatedtaxa,atbasisofrecord,brbed,bdbehavior,bbibliographiccitation,bccatalognumber,catclass,clcollectioncode,cccollectionid,cidcontinent,ctcoordinateprecision,cpcoordinateuncertaintyinmeters,cucountry,cncountrycode,cnccounty,codatageneralizations,dgdatasetid,diddatasetname,dndateidentified,diday,ddecimallatitude,dlatdecimallongitude,dlngdisposition,dspdynamicproperties,dpearliestageorloweststage,eageearliesteonorlowesteonothem,eeonearliestepochorlowestseries,eepearliesteraorlowesterathem,eeraearliestperiodorlowestsystem,ependdayofyear,edyestablishmentmeans,emeventdate,edeventid,eideventremarks,ereventtime,etfamily,fmfieldnotes,fntfieldnumber,fnmfootprintspatialfit,fpsffootprintsrs,fpsfootprintwkt,fpformation,frmgenus,ggeodeticdatum,gdgeologicalcontextid,gidgeoreferencedby,gbgeoreferenceprotocol,gpgeoreferenceremarks,grgeoreferencesources,gsgeoreferenceverificationstatus,gvsgroup,grphabitat,hhigherclassification,hchighergeography,hghighergeographyid,hgidhighestbiostratigraphiczone,hbzidentificationid,idididentificationqualifier,iqidentificationreferences,irfidentificationremarks,irmidentifiedby,ibindividualcount,icindividualid,indidinformationwithheld,iwinfraspecificepithet,iseinstitutioncode,icinstitutionid,iidisland,iislandgroup,igkingdom,klanguage,lnlatestageorhigheststage,lagelatesteonorhighesteonothem,leonlatestepochorhighestseries,leplatesteraorhighesterathem,leralatestperiodorhighestsystem,lplifestage,lslithostratigraphicterms,ltlocality,llocationaccordingto,lcatlocationid,lidlocationremarks,lrlowestbiostratigraphiczone,lbzmaximumdepthinmeters,mxdmaximumdistanceabovesurfaceinmeters,mxamaximumelevationinmeters,mxemember,memminimumdepthinmeters,mndminimumdistanceabovesurfaceinmeters,mnaminimumelevationinmeters,mnemodified,mdmonth,mmunicipality,mnnameaccordingto,natnameaccordingtoid,natidnamepublishedin,npnamepublishedinid,npidnomenclaturalcode,ncnomenclaturalstatus,nsoccurrencedetails,odoccurrenceid,oidoccurrenceremarks,oroccurrencestatus,osorder,ordoriginalnameusage,onuoriginalnameusageid,onuidothercatalognumbers,ocnownerinstitutioncode,oicparentnameusage,pnuparentnameusageid,pnuidphylum,phpointradiusspatialfit,prsfpreparations,ppreviousidentifications,pirecordedby,rbrecordnumber,rnreproductivecondition,rcrights,rrightsholder,rhsamplingeffort,smesamplingprotocol,smpscientificname,snscientificnameauthorship,snascientificnameid,sidsex,sxspecificepithet,sestartdayofyear,sdystateprovince,spsubgenus,sgtaxonconceptid,tcidtaxonid,tidtaxonomicstatus,tstaxonrank,trtaxonremarks,trmtype,ttypestatus,tsverbatimcoordinates,vcverbatimcoordinatesystem,vcsverbatimdepth,vdverbatimelevation,veverbatimeventdate,vedverbatimlatitude,vlatverbatimlocality,vlverbatimlongitude,vlngverbatimsrs,vsverbatimtaxonrank,vtrvernacularname,vnwaterbody,wyear,y
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