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BUG: Cyclic dependency on rule samtools_sort #1028

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@VDaric

Description

Describe the bug
I am getting an error from seq2science alignment pipeline

snakemake.exceptions.CyclicGraphException: Cyclic dependency on rule samtools_sort.

CyclicGraphException in rule samtools_sort in file /work/project/oob-biom/bsbii-tools/conda/envs/seq2science/lib/python3.10/site-packages/seq2science/rules/bam_cleaning.smk, line 206:
Cyclic dependency on rule samtools_sort.

To Reproduce
seq2science run alignment --cores 12

Here are my ziped config and samle files :

config.zip
samples.zip

Not sure if it's a bug or I misconfigured something.

Thanks !

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