bump version, update NEWS

tsjzz · Jul 12, 2021 · eb45b35 · eb45b35
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diff --git a/DESCRIPTION b/DESCRIPTION
@@ -1,5 +1,5 @@
 Package: Seurat
-Version: 4.0.3.9008
+Version: 4.0.3.9009
 Date: 2021-07-12
 Title: Tools for Single Cell Genomics
 Description: A toolkit for quality control, analysis, and exploration of single cell RNA sequencing data. 'Seurat' aims to enable users to identify and interpret sources of heterogeneity from single cell transcriptomic measurements, and to integrate diverse types of single cell data. See Satija R, Farrell J, Gennert D, et al (2015) <doi:10.1038/nbt.3192>, Macosko E, Basu A, Satija R, et al (2015) <doi:10.1016/j.cell.2015.05.002>, Stuart T, Butler A, et al (2019) <doi:10.1016/j.cell.2019.05.031>, and Hao, Hao, et al (2020) <doi:10.1101/2020.10.12.335331> for more details.

diff --git a/NEWS.md b/NEWS.md
@@ -4,6 +4,7 @@
 - Add DensMAP option to `RunUMAP()` ([#4630](https://github.com/satijalab/seurat/pull/4630))
 - Add `image` parameter to `Load10X_Spatial()` and `image.name` parameter to `Read10X_Image()` ([#4641](https://github.com/satijalab/seurat/pull/4641))
 - Add `ReadSTARsolo()` function to read output from STARsolo
+- Add `densify` parameter to `FindMarkers()`
 
 ## Changes
 - Warn and continue rather than erroring if not all features are available in `FindSpatiallyVariableFeatures()` ([#4611](https://github.com/satijalab/seurat/issues/4611))

diff --git a/src/RcppExports.cpp b/src/RcppExports.cpp
@@ -6,11 +6,6 @@
 
 using namespace Rcpp;
 
-#ifdef RCPP_USE_GLOBAL_ROSTREAM
-Rcpp::Rostream<true>&  Rcpp::Rcout = Rcpp::Rcpp_cout_get();
-Rcpp::Rostream<false>& Rcpp::Rcerr = Rcpp::Rcpp_cerr_get();
-#endif
-
 // RunModularityClusteringCpp
 IntegerVector RunModularityClusteringCpp(Eigen::SparseMatrix<double> SNN, int modularityFunction, double resolution, int algorithm, int nRandomStarts, int nIterations, int randomSeed, bool printOutput, std::string edgefilename);
 RcppExport SEXP _Seurat_RunModularityClusteringCpp(SEXP SNNSEXP, SEXP modularityFunctionSEXP, SEXP resolutionSEXP, SEXP algorithmSEXP, SEXP nRandomStartsSEXP, SEXP nIterationsSEXP, SEXP randomSeedSEXP, SEXP printOutputSEXP, SEXP edgefilenameSEXP) {