Makefile: support standard compiler flags

* apply the C preprocessor flags to C code (not just C++ code) * apply LDFLAGS when linking
tsjzz · Nov 10, 2017 · 601b3c7 · 601b3c7
1 parent e50355e
commit 601b3c7
Showing 1 changed file with 3 additions and 3 deletions.
diff --git a/Makefile b/Makefile
@@ -116,15 +116,15 @@ include .depend
 	$(CXX) -o $@ -c $(CXXFLAGS) $(CPPFLAGS) -fPIC $<
 
 .c.o:
-	$(CC) -o $@ -c $(CFLAGS) $(H5_INCLUDE) -fPIC $<
+	$(CC) -o $@ -c $(CFLAGS) $(CPPFLAGS) $(H5_INCLUDE) -fPIC $<
 
 # Link main executable
 $(PROGRAM): src/main/nanopolish.o $(CPP_OBJ) $(C_OBJ) $(HTS_LIB) $(H5_LIB) $(EIGEN_CHECK)
-	$(CXX) -o $@ $(CXXFLAGS) $(CPPFLAGS) -fPIC $< $(CPP_OBJ) $(C_OBJ) $(HTS_LIB) $(H5_LIB) $(LIBS)
+	$(CXX) -o $@ $(CXXFLAGS) $(CPPFLAGS) -fPIC $< $(CPP_OBJ) $(C_OBJ) $(HTS_LIB) $(H5_LIB) $(LIBS) $(LDFLAGS)
 
 # Link test executable
 $(TEST_PROGRAM): src/test/nanopolish_test.o $(CPP_OBJ) $(C_OBJ) $(HTS_LIB) $(H5_LIB)
-	$(CXX) -o $@ $(CXXFLAGS) $(CPPFLAGS) -fPIC $< $(CPP_OBJ) $(C_OBJ) $(HTS_LIB) $(H5_LIB) $(LIBS)
+	$(CXX) -o $@ $(CXXFLAGS) $(CPPFLAGS) -fPIC $< $(CPP_OBJ) $(C_OBJ) $(HTS_LIB) $(H5_LIB) $(LIBS) $(LDFLAGS)
 
 test: $(TEST_PROGRAM)
 	./$(TEST_PROGRAM)