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Commits on Dec 10, 2019

• Makes HDF5 use optional

  pmelsted

  committed
  079a670

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Commits on Nov 8, 2019

• Adds progress information, single cell reads for bus, fixes snakefile

  pmelsted

  committed
  ffc1495

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Commits on Jan 29, 2018

• modified chromosome names

  pmelsted

  committed
  a91e512

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• fixes bam header bug and updates example

  pmelsted

  committed
  2da9184

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Commits on Oct 4, 2015

• add snakemake and readme to test

  pimentel

  committed
  3024767

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Commits on May 10, 2015

• fixed formatting

  lakigigar

  committed
  b07fd96

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Commits on May 3, 2015

• Adding test

  lakigigar

  committed
  2e22880

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Commits on Apr 20, 2015

• update bootstrap to start from EM round before zeroed off

  pimentel

  committed
  523f10e

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Commits on Mar 13, 2015

• compute mean frag len. comment out index test since interface has changed

  pimentel

  committed
  b2570d6

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Commits on Feb 9, 2015

• add multinomial distribution

  pimentel

  committed
  3b5fe3a

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Commits on Feb 6, 2015

• Merge hjp/em in

  pimentel

  committed
  e37665f

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Commits on Feb 4, 2015

• Added reads

  pmelsted

  committed
  a1ccc48

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• Command line options fixed

  pmelsted

  committed
  0f798a9

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Commits on Feb 2, 2015

• calculate weights based on effective length

  pimentel

  committed
  d84aa03

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• Fixed hashmap bugs

  pmelsted

  committed
  ac8ecf5

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Commits on Jan 31, 2015

• scaffold EM

  pimentel

  committed
  cfd6817

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Commits on Jan 28, 2015

• update tests. remove set_k from KmerIndex constructor to avoid double calling

  pimentel

  committed
  9716b1f

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• call Kmer::set_k() in KmerIndex constructor. fixes test suite issues

  pimentel

  committed
  1f4d86c

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• kmer iterator test

  pimentel

  committed
  8dc5241

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• make dummy test using kseq

  pimentel

  committed
  637ef40

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• reorg KSEQ_INIT

  pimentel

  committed
  27298c6

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Commits on Jan 27, 2015

• remove sequences.* and corresponding tests

  pimentel

  committed
  e7ba177

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Commits on Jan 26, 2015

• index wip

  pimentel

  committed
  1b13968

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• add small test file and ipython notebook to get transcripts

  pimentel

  committed
  4da56b4

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Commits on Nov 18, 2014

• update kmer functions

  pimentel

  committed
  fe3f828

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Commits on Nov 13, 2014

• add reverse complement

  pimentel

  committed
  2aa49c7

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• restructure tests

  pimentel

  committed
  828a5b1

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• rename tests. fix out of range exception bug

  pimentel

  committed
  be226d4

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• add KmerView class

  pimentel

  committed
  3eb7f27

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• Add .gitignore and boilerplate tests

  pimentel

  committed
  a09bba3

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