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Commits on Aug 19, 2021

• [bugfix] Fix sample and phenotype extraction for DRAGEN

  nh13

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Commits on Aug 12, 2021

• Added code for removing handlers from previous calls

  ErikDanielsson

  committed
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Commits on Aug 10, 2021

• Replace '/' in section name with '_' when writing data to file

  ErikDanielsson

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Commits on Jul 7, 2021

• Consideration of composite ID

  HofLucien

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Commits on Jul 6, 2021

• RSeQC - clean_s_name.

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  ewels

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Commits on Jul 4, 2021

• Add new CI for -s and --fn_as_s_name, fix failures.

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  ewels

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• Update usage of clean_s_name to pass full file object.

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• New use_filename_as_sample_name config option / --fn_as_s_name cli flag

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• Cutadapt: Don't take the last command line string for the sample name if it looks like a command-line flag

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Commits on Jul 3, 2021

• Merge pull request MultiQC#1344 from kpalin/nanostat

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  ewels

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• Make NanoStat search pattern more specific

  ewels

  committed
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• Don't use brackets for stat_type suffix

  ewels

  committed
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• Table configs

  ewels

  committed
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• Section descriptions

  ewels

  committed
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• Table column colour schemes

  ewels

  committed
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• Nanostat: Bit more table header cleanup

  ewels

  committed
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• NanoStat: Start sorting out tables, make the bar plot nicer.

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  ewels

  committed
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• NanoStat: Minor code tidying

  ewels

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• Lima: Log how many samples were found

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Commits on Jul 2, 2021

• Merge branch 'master' into nanostat

  ewels

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• Merge pull request MultiQC#1439 from jamorrison/master

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  ewels

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• Picard - no need for if statement if catching the KeyError

  ewels

  committed
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• Mosdepth: Apply code review suggestions

  ewels

  committed
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• Mosdepth filtering: Minor tweaks + bugfixes

  ewels

  committed
  a0ecbb7

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• Fix merge conflict

  ewels

  committed
  37803a2

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• Barcode table - point to docs in description text.

  ewels

  committed
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• Lima: Replace bargraph with table

  ewels

  committed
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• Lima: Refactor ZMW filtering bargraph to use stacking

  ewels

  committed
  288108b

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• Fix merge conflicts

  ewels

  committed
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• Strip custom cli option + barcode renaming. Minor refactoring.

  ewels

  committed
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• Cutadapt: Try to find unexplained filtered reads.

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  ewels

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• Cutadapt: Save the version of cutadapt used

  ewels

  committed
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• Att TIN stdev as a hidden column to the general stats table.

  ewels

  committed
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• RSeQC TIN - remove bar plot

  ewels

  committed
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• TIN search pattern - file always ends .summary.txt, I think.

  ewels

  committed
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