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Reference_sequences

This folder contains reference sequences used in Liu*, Begik* et al., 2019 (PMID: 31501426).

Yeast genome reference

List of "known" M6A-modified sites in yeast, identified with orthogonal method (m6A-seq)

These m6A sites were identified by Schwartz et al., 2013 (PMCID: PMC3956118) in S. cerevisiae SK1 transcriptome, and is the same identical list that is provided as Supplementary Material by Schwartz et al.

These sites were used for assessment and validation of Epinano.

The coordinates of this file are 1-based.

Curlcake (cc) sequences

These files were used in Liu and Begik et al., 2019. https://doi.org/10.1038/s41467-019-11713-9

FASTQ and Fast5 files of m6A-modified and unmodified CCs are available in SRA and GEO (see Data availability section of the paper)