change flags of epinano-variants in run.sh

tsjzz · Oct 28, 2020 · 38911ab · 38911ab
1 parent ca0f74c
commit 38911ab
Showing 1 changed file with 2 additions and 2 deletions.
diff --git a/test_data/make_predictions/run.sh b/test_data/make_predictions/run.sh
@@ -25,8 +25,8 @@ echo "reads can also be mapped to reference genome with minimap2"
 
 
 echo "compute varitants/error frequencies from bam file"
-python ../../Epinano_Variants.py -R ref.fa -b wt.bam -t 6 -T t -s ../../misc/sam2tsv.jar
-python ../../Epinano_Variants.py -R ref.fa -b ko.bam -t 6 -T t -s ../../misc/sam2tsv.jar
+python ../../Epinano_Variants.py -R ref.fa -b wt.bam -n 6 -T t -s ../../misc/sam2tsv.jar
+python ../../Epinano_Variants.py -R ref.fa -b ko.bam -n 6 -T t -s ../../misc/sam2tsv.jar
 
 echo "predict based on deviance of mis" 
 echo "AND"