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Commits on Nov 23, 2021

• Merge pull request KUL-Radneuron#7 from KUL-Radneuron/dev

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  Rad-dude

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• placed KUL_synth_pats and KUL_cook_temp in root KUL_VBG dir

  Rad-dude

  committed
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• Fixed minor bugs in failure check of hd-bet output, and removed -x from initial antsReg affine resgitration

  Rad-dude

  committed
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Commits on Nov 16, 2021

• Merge pull request KUL-Radneuron#6 from treanus/dev

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  KUL-Radneuron

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• fixed cuda check. nvidia-smi vram insteadof nvcc

  treanus

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Commits on Nov 12, 2021

• Updated readme with example and brief mention of additional scripts

  Rad-dude

  committed
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• updated Readme.md and added figs and pdf version

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Commits on Nov 11, 2021

• Merge pull request KUL-Radneuron#5 from treanus/dev

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  treanus

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• update readme

  treanus

  committed
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• update readme

  treanus

  committed
  c7a9f85

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• update readme

  treanus

  committed
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• add figures to readme

  treanus

  committed
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• Merge branch 'dev' of https://github.com/treanus/KUL_VBG into dev

  treanus

  committed
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• adding comments for radwan to solve

  treanus

  committed
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• update readme in dev

  treanus

  committed
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Commits on Oct 28, 2021

• fixed minor bug lines 2368 - 2374

  Rad-dude

  committed
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Commits on Oct 13, 2021

• added check for nvram and automated determination of batch size for FaSu

  Rad-dude

  committed
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• Merge pull request KUL-Radneuron#4 from treanus/dev

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  KUL-Radneuron

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• Search, test & set the freesurfer license at start

  treanus

  committed
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• Fastsurfer: use less memory & ignore fs version

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  committed
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• update

  treanus

  committed
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Commits on Sep 11, 2021

• updated KUL_synth_pats by adding fs recon-all -autorecon1 initially, updated test data

  Rad-dude

  committed
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Commits on Aug 20, 2021

• Fixed minor bug in nat_filled_mask.nii.gz, updated readme

  Rad-dude

  committed
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Commits on Aug 18, 2021

• Added hd-bet cpu mode if first attempt fails, fixed errors in KUL_synth_pats_4VBG.sh script

  Rad-dude

  committed
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Commits on Aug 10, 2021

• Added hd-bet gpu if nvc is found, switched to accurate mode hd-bet, added pure FS parcellation stream

  Rad-dude

  committed
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Commits on Jul 28, 2021

• VBG -> fixed FS output dir, synth_paths -> added CUDA search loop and CPU mode for HD-BET

  Rad-dude

  committed
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Commits on Jul 15, 2021

• fixed bug in FS_lic for -P 2

  Rad-dude

  committed
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• added FS_lic finder loop to -P 2 wf

  Rad-dude

  committed
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Commits on Jul 5, 2021

• Fixed FaSu output dir bug in -P 1

  

  Ahmed Radwan

  committed
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Commits on Jul 4, 2021

• Allowed FS Lic names are now .license and license.txt, searched 4 in FS_home, fixed bug in FaSu output dirs

  

  Ahmed Radwan

  committed
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Commits on Jun 28, 2021

• fixed bug when trying to find FaSu output aparc+aseg.mgz line 2882

  

  Ahmed Radwan

  committed
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Commits on May 19, 2021

• Modified FS parcellation workflow to use FastSurfer generated surf and label folders and continue with -make all

  Rad-dude

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Commits on May 14, 2021

• fixed R and L masks finding error

  Rad-dude

  committed
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Commits on May 13, 2021

• minor debugging and cleaning

  Rad-dude

  committed
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Commits on May 12, 2021

• updated version and readme file with latest changes

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  committed
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