This repository aims to speed up the process of querying and assigning relevant UMLS CUIs to fields in your data dictionary. Currently, you can customize batch query scripts that utilize the UMLS api, MetaMap api, and/or an experimental semantic search approach with vector embeddings. Further development in progress.
Knowledge-Aware ICD Coding.
This repository is dedicated to development of Python scripts which use API to UMLS MetaMap to map semantics of common data elemnts to UMLS and NCI concepts
Group biomedical records from different sources (PubMed, CTgov, EMA drug register) based on the drug and disease entities mentioned in them.
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