A Go package for engineering organisms.

✏️ A versatile DNA sequence optimizer

The resources I always recommend to new synthetic biologists.

Reinforcement Learning based bioretrosynthesis tool

📊 Codon usage tables in code-friendly format + Python bindings

A Go package for designing DNA.

Learning Kinetic Models from Time Series Proteomics and Metabolomics Data

🌠 Easily download genomes and build BLAST/Bowtie indexes in Python

A lightweight Python library designed to simplify the development of tools that render SBOL Visual diagrams.

An IDE for synthetic biology

RetroPath2.0 to pathways

Repository of standardized biological experimental data and metadata

Batch domestication of genetic parts with Python

Resources for learning Biotechnology, Biology, Synthetic Biology, Genomic and Bioinformatic

Non-Repetitive Parts Calculator - Automated design and discovery of non-repetitive genetic parts for engineering stable genetic systems

collection of miscellaneous command line bioinformatic scripts

(In development) Microservices full-stack single-page web app built with Typescript, React, Redux, Styled Components (for CSS-in-JS), Python, Django, Redis, and PostgreSQL. Separate servers for LIMS and Payments hosted on AWS EC2 instances with Kubernetes and circleci CI/CD. Database hosted on AWS DynamoDB. CDN through AWS Cloudfront and DNS thr…

Suite of tools that work on rpSBML format

Python wrapper for Retropath2.0 Knime workflow

A library for the Synthetic Biology Open Language (SBOL) written in TypeScript, for JavaScript/TypeScript applications in the browser or node.js