MMseqs2: ultra fast and sensitive search and clustering suite
Multiple sequence and structure alignment with top benchmark scores scalable to thousands of sequences. Generates replicate alignments, enabling assessment of downstream analyses such as trees and predicted structures.
MeShClust: an intelligent tool for clustering DNA sequences
This repository contains all the source files required to run DeLUCS, a deep learning clustering algorithm for DNA sequences.
MeShClust2: Application of alignment-free identity scores in clustering long DNA sequences
Bioinformatic Tools for analyzing targeted amplicon sequencing developed by Nicholas Hathaway of Bailey Lab
Cluster up to millions of peptide sequences on shared sequence motifs.
Code to reproduce the experiments and the proposed visualization from 'Data mining in the development of mHealth apps: assessing in-app navigation through Markov Chain analysis'
CD HIT cluster file parser
Dereplicate long sequences
Gene download from NCBI database, sequence alignment and clusterization, realization of different bioinformatics algorithms within ITMO 4 sem course
Protein Clustering
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