Segment Anything for Microscopy
Image segmentation - general superpixel segmentation & center detection & region growing
nucleus/cell and histopathology image classification,detection,segmentation
Our solution for ICIAR 2018 Grand Challenge
Read and write Neuroglancer datasets programmatically.
Visualize, share and annotate your large 3D images online
A Python software library with a variety of functions for (optical) microscopy image restoration, reconstruction and analysis.
Mastodon – a large-scale tracking and track-editing framework for large, multi-view images.
Creating figures and animations for multi-channel images with a focus on microscopy.
Generative Adversarial Network for single image super-resolution in high content screening microscopy images
Particle tracking by solving linear assignment problem.
Utils and convenience functions for large-scale bio-image analysis.
Pure Python library for reading NIS Elements ND2 images and metadata
ZetaStitcher is a tool designed to stitch large volumetric images such as those produced by Light-Sheet Fluorescence Microscopes.
Distributed segmentation for bio-image-analysis
Label Free Prediction of Cell Painting from Brightfield Images
PiSCAT is a python-based package with a graphical user interface for performing high-performance analysis on a variety of iSCAT measurements.
Global Voxel Transformer Networks (GVTNets)
A Python library for easily calculating image-quality related features from images
This project is done for the Biomedicine, Biotechnology and Public Healthcare department of the University of Cádiz. They idea is to automatize the processing of the microscopic images of their experiments related to angiogenesis.
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