DeepVariant is an analysis pipeline that uses a deep neural network to call genetic variants from next-generation DNA sequencing data.
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Updated
Dec 9, 2024 - Python
DeepVariant is an analysis pipeline that uses a deep neural network to call genetic variants from next-generation DNA sequencing data.
🦄 An Artificial Inteligence to teach Google's Dinosaur to jump cactus
Official code repository for GATK versions 4 and up
Using artificial intelligence and genetic algorithms to automatically write programs. Tutorial: http://www.primaryobjects.com/cms/article149
fast BAM/CRAM depth calculation for WGS, exome, or targeted sequencing
DNABERT: pre-trained Bidirectional Encoder Representations from Transformers model for DNA-language in genome
Personalized Genomics and Proteomics. Main diet: Ensembl, side dishes: SNPs
🔬 Assemble large genomes using short reads
karyoploteR - An R/Bioconductor package to plot arbitrary data along the genome
GenomeTools genome analysis system.
[ICLR 2024] DNABERT-2: Efficient Foundation Model and Benchmark for Multi-Species Genome
Genome annotation with AUGUSTUS
A genome browser designed for complex structural variants and long reads.
Scientific Large Language Models: A Survey on Biological & Chemical Domains
Nanopore sequence read simulator
Whole Genome Sequencing analysis, WGS analysis
Next generation sequencing reads de novo assembler.
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