MACS -- Model-based Analysis of ChIP-Seq
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Nov 30, 2024 - Python
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dnase-seq
Here are 18 public repositories matching this topic...
ATAC-seq and DNase-seq processing pipeline
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Jun 21, 2022 - Python
chromatin Variability Across Regions (of the genome!)
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Jul 10, 2024 - R
Regulatory Genomics Toolbox: Python library and set of tools for the integrative analysis of high throughput regulatory genomics data.
bioinformatics dnase-seq genomics ngs motif chip-seq atac-seq motif-analysis footprinting differential-peak-calling
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Nov 16, 2024 - Python
PECA is a software for inferring context specific gene regulatory network from paired gene expression and chromatin accessibility data
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Oct 6, 2023 - MATLAB
deepStats: a stastitical toolbox for deeptools and genomic signals
bootstrap dnase-seq rna-seq dataviz genomics sequencing statistical-analysis chip-seq atac-seq galaxy vizualize-data genomics-visualization mnase-seq deeptools genomic-signals
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Jul 5, 2021 - R
Big data Regression for predicting DNase I hypersensitivity
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Aug 27, 2024 - C++
🐛 How to use CENTIPEDE to determine if a transcription factor is bound.
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Mar 18, 2018 - R
Pipeline for predicting ChIP-seq peaks in novel cell types using chromatin accessibility
dnase-seq transcription-factors atac-seq histone-modifications chromatin-accessibility epigenetic-events
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Aug 30, 2022 - Python
Improving the feature density based peak caller with dynamic statistics
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Oct 23, 2024 - Python
PECA is a software for inferring context specific gene regulatory network from paired gene expression and chromatin accessibility data
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Updated
Jan 11, 2023 - MATLAB
A robust statistical test for TF footprint data analyses
dnase-seq r bioconductor statistical-tests atac-seq transcription-factor-binding footprinting chromatin-accessibiity
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Mar 11, 2020 - R
This repository contains the prebuilt models for BIRD.
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Aug 27, 2024
A dataset for big data prediction.
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Jul 18, 2019
Scripts to run footprinting and motif-flanking accessibility analysis in DNase-seq/ ATAC-seq data
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Apr 1, 2023 - R
Codes for data processing and figure generation
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May 10, 2018 - Python
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