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amici

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parPE

ICB-DCM / parPE

Parameter estimation for dynamical models using high-performance computing, batch and mini-batch optimizers, and dynamic load balancing.

optimization systems-biology ode high-performance-computing parameter-estimation hacktoberfest dynamical-modeling sbml petab amici

Updated Nov 6, 2024
C++

ICB-DCM / fiddy

Finite difference methods.

finite-differences hacktoberfest gradient-check amici

Updated Oct 15, 2024
Python

SPARCED / SPARCED

Mechanistic Pan-Cancer Signaling Model

cell-cycle sbml proliferation dna-damage cell-biology mcf10a quantitative-systems-pharmacology apoptosis amici cancer-cell antimony mechanistic-modeling

Updated Nov 6, 2024
C++

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