Source code of the Bgee pipeline used to build the Bgee database

🔬 R package: Analysis of Large Affymetrix Microarray Data Sets

A collection of miscellaneous bioinformatics scripts

backup for https://www.bioconductor.org/packages/3.12/bioc/html/simpleaffy.html

Affymetrix OncoScan / OncoScan_CNV processing using apt-copynumber-onco-ssa (2.4.0)

Various python programs I use for the manipulation of SNP genotype datasets and other bioinformatics tasks. This repository features miscellaneous scripts to help work efficiently in common bioinformatics tasks I encounter. Use at own risk

Gene expression experiments using Python and R

App to illustrate the history of transcript cluster annotations of the Affy array HTA2.0

Affymetrix CytoScan (750k / HD) processing using apt-copynumber-cyto-ssa (2.4.0)

🔬 Affymetrix Fusion Software Developers Kit (SDK)

Analysis of gene expression in umbilical cord blood from ASD, Non-TD, and TD subjects in the MARBLES and EARLI studies

R scripts & functions for SNP data analysis of genotyping data from Affymetrix Axiom arrays

Smarter database repository

Microarray Analysis of Differential Expression

Find shared SNPs between different microarray chips

Creates a GCT file from a set of CEL files from Affymetrix ST arrays.

Affymetrix GenomeWideSNP_6 processing using apt-copynumber-workflow (1.20.0)

Updated version to handle CEL files

Differential Expression Analysis Pipeline

The fruits of my labor to get OpenBLAS to work with R and fix the p_thread22() error in affy::rma()