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Syntax issues when parsing pubmed baseline xml

bug

Status: Open.

#161 In titipata/pubmed_parser;

· robinweisenburger opened on Oct 28, 2024

AttributeError: 'NoneType' object has no attribute 'getchildren'

bug

Status: Open.

#151 In titipata/pubmed_parser;

· qm-intel opened on Aug 11, 2024

AttributeError: 'NoneType' object has no attribute 'text' when using parse_pubmed_caption

bug

Status: Open.

#150 In titipata/pubmed_parser;

· qm-intel opened on Aug 11, 2024

How to extract the figures' inline mentions from the artcile xml file?

question

Status: Open.

#149 In titipata/pubmed_parser;

· qm-intel opened on Aug 10, 2024

Handling of non-ASCII / unicode characters

Status: Open.

#140 In titipata/pubmed_parser;

· Michael-E-Rose opened on May 16, 2024

CALL FOR MAINTAINER/CONTRIBUTOR FOR PUBMED_PARSER

enhancement

Status: Open.

#128 In titipata/pubmed_parser;

· titipata opened on Oct 12, 2023

Bug report - XML citations from website

bug

Status: Open.

#127 In titipata/pubmed_parser;

· chungimungi opened on Oct 11, 2023

parse_pubmed_paragraph() function seems to miss some paragraphs sometimes.

bug

Status: Open.

#111 In titipata/pubmed_parser;

· zhao-zy15 opened on Jan 7, 2022

All of PubMed XML was updated to follow the MEDLINE XML format.

enhancement

Status: Open.

#109 In titipata/pubmed_parser;

· MattYoon opened on Dec 26, 2021

Error using parse_pubmed_xml

bug

help wanted

Status: Open.

#95 In titipata/pubmed_parser;

· sublimotion opened on Oct 22, 2020

Return table in format that can convert to multilayer dataframe

help wanted

Status: Open.

#42 In titipata/pubmed_parser;

· titipata opened on Apr 1, 2017

PMID to PMC API from Medline cannot convert all provided PMID

enhancement

Status: Open.

#37 In titipata/pubmed_parser;

· titipata opened on Dec 29, 2016