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20 changes: 10 additions & 10 deletions R/dat_proc.R
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Expand Up @@ -26,17 +26,17 @@ trgsmetric <- structure(
"Protect existing artificial reefs; enhance habitat complexity where feasible; expand reef area to promote fish and wildlife benefits",
"Identify and protect existing tidal flats; assess restoration potential of other non-vegetated subtidal areas",
"Protect existing seagrasses; assess restoration potential of non-vegetated subtidal areas",
"2030: Protect existing oysters and restore 20 hectares; increase target by 20 hectares each out-decade",
"2030: Construct 1.6 kilometers each year; better define opportunity areas; increase target to 2.4 and 3.2 kilometers per year for out decades",
"2030: Protect existing intertidal mosaic and restore 405 hectares; increase target by 61 hectares each out-decade; includes the mosaic of mangrove, salt barren, and salt marsh habitats",
"2030: Protect existing oysters and restore 20 hectares; increase target by 20 hectares each decade",
"2030: Construct 1.6 kilometers each year; better define opportunity areas; increase target to 2.4 and 3.2 kilometers per year for each decade",
"2030: Protect existing intertidal mosaic and restore 405 hectares; increase target by 61 hectares each decade; includes the mosaic of mangrove, salt barren, and salt marsh habitats",
"Protect existing mangrove forests; restore opportunistically within the intertidal mosaic",
"2030: Protect existing salt barrens and restore 20 hectares; increase target by 20 hectares per out decade",
"2030: Protect existing low salinity salt marshes and restore 101 hectares; increase target by 20 hectares each out-decade",
"Inventory mapped tidal tributaries and identify restoration potential; restore 6.4 kilometers of urban tidal creek habitat where feasible; increase target by 3.2 kilometers per out decade",
"2030: Protect existing coastal uplands and restore 61 hectares; increase target by 20 hectares each out decade",
"2030: Protect existing non-forested freshwater wetlands and restore 546 hectares; increase target by 20 hectares each out decade",
"2030: Protect existing forested freshwater wetlands and restore 61 hectares; increase target by 20 hectares each out decade",
"2030: Protect existing native uplands and restore 182 hectares; increase target by 20 hectares each out decade; focus on pine flatwoods and protect current extent"
"2030: Protect existing salt barrens and restore 20 hectares; increase target by 20 hectares each decade",
"2030: Protect existing low salinity salt marshes and restore 101 hectares; increase target by 20 hectares each decade",
"Inventory mapped tidal tributaries and identify restoration potential; restore 6.4 kilometers of urban tidal creek habitat where feasible; increase target by 3.2 kilometers each decade",
"2030: Protect existing coastal uplands and restore 61 hectares; increase target by 20 hectares each decade",
"2030: Protect existing non-forested freshwater wetlands and restore 546 hectares; increase target by 20 hectares each decade",
"2030: Protect existing forested freshwater wetlands and restore 61 hectares; increase target by 20 hectares each decade",
"2030: Protect existing native uplands and restore 182 hectares; increase target by 20 hectares each decade; focus on pine flatwoods and protect current extent"
)
),
class = "data.frame",
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4 changes: 2 additions & 2 deletions R/tabs.R
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Expand Up @@ -21,8 +21,8 @@ totab <- tibble(
)

thm <- function(x){
flextable::width(x, width = 1.75, j = 1) %>%
flextable::width(width = 4.75, j = 2) %>%
flextable::width(x, width = 2.25, j = 1) %>%
flextable::width(width = 4.25, j = 2) %>%
# flextable::width(width = 2.75, j = 7) %>%
fontsize(size = 8, part = 'all') %>%
flextable::padding(padding = 0, part = 'all')
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14 changes: 7 additions & 7 deletions manu-draft.qmd

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53 changes: 27 additions & 26 deletions refs.bib
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Expand Up @@ -43,7 +43,7 @@ @article{Baldwin38

@techreport{Kawula18,
author = {Kawula, R. and Redner, J.},
institution = {Center for Spatial Analysis, Fish and Widlife Research Institute, Florida Fish and Wildlife Conservation Commission, Tallahassee, Florida},
institution = {{Center for Spatial Analysis, Fish and Widlife Research Institute, Florida Fish and Wildlife Conservation Commission, Tallahassee, Florida}},
number = {Final Report},
title = {{F}lorida {L}and {C}over {C}lassification {S}ystem},
year = {2018},
Expand Down Expand Up @@ -82,7 +82,7 @@ @article{Houde93
@incollection{Kushlan90,
address = {Orlando, Florida},
author = {Kushlan, J.A.},
booktitle = {Ecosystems of Florida},
booktitle = {Ecosystems of {F}lorida},
editor = {Myers, R.L. and Ewel, J.J.},
pages = {324-363},
publisher = {University of Central Florida Press},
Expand All @@ -95,15 +95,15 @@ @article{Sprandel00
journal = {Journal of Field Ornithology},
number = {4},
pages = {708-720},
title = {Distribution of wintering shorebirds in coastal Florida},
title = {Distribution of wintering shorebirds in coastal {F}lorida},
volume = {71},
year = {2000},
}

@article{AvilaGarcia20,
author = {\'{A}vila-Garc\'{i}a, D. and Morat\'{o}, J. and P\'{e}rez-Mauss\'{a}n, A. I. and Santill\'{a}n-Carvantes, P. and Alvarado, J. and Comin FA.},
journal = {Ecosystem Services},
title = {Impacts of alternative land-use policies on water ecosystem services in the Rio Grande de Comitan-Lagos de Montebello watershed, Mexico},
title = {Impacts of alternative land-use policies on water ecosystem services in the {R}io {G}rande de {C}omitan-{L}agos de {M}ontebello watershed, {M}exico},
volume = {45},
year = {2020},
url = {https://doi.org/10.1016/j.ecoser.2020.101179},
Expand All @@ -114,7 +114,7 @@ @article{Calil15
journal = {PLoS One},
number = {7},
pages = {e0132651},
title = {Aligning natural resource conservation and flood hazard mitigation in California},
title = {Aligning natural resource conservation and flood hazard mitigation in {C}alifornia},
volume = {10},
year = {2015},
url = {https://doi.org/10.1371/journal.pone.0132651},
Expand All @@ -124,7 +124,7 @@ @article{Menendez18
author = {Men\'{e}ndez, P. and Losada, I. J. and Beck, M. W. and Torres-Ortega, S. and Espejo, A. and Narayan, S. and D\'{i}az-Simal, P. and Lange, G.},
journal = {Ecosystem Services},
pages = {24-36},
title = {Valuing the protection services of mangroves at national scale: The Philippines},
title = {Valuing the protection services of mangroves at national scale: The {P}hilippines},
volume = {34(A)},
year = {2018},
url = {https://doi.org/10.1016/j.ecoser.2018.09.005},
Expand All @@ -134,7 +134,7 @@ @article{Dontis20
author = {Dontis, E. E. and Radabaugh, K. R. and Chappel, A. R. and Russo, C. E. and Moyer, R.P.},
journal = {Estuaries and Coasts},
pages = {1470-1488},
title = {Carbon storage increases with site age as created salt marshes transition to mangrove forests in Tampa Bay, Florida (USA)},
title = {Carbon storage increases with site age as created salt marshes transition to mangrove forests in {T}ampa {B}ay, {F}lorida ({USA})},
volume = {43},
year = {2020},
url = {https://doi.org/10.1007/s12237-020-00733-0},
Expand All @@ -155,7 +155,7 @@ @techreport{Robison20
author = {Robison, D. and Ries, T. and Saarinen, J. and Tomasko, D. and Sciarrino, C.},
institution = {Tampa Bay Estuary Program, St. Petersburg, Florida},
number = {#07-20},
title = {Tampa Bay Estuary Program: 2020 Habitat Master Plan Update},
title = {{Tampa Bay Estuary Program: 2020 Habitat Master Plan Update}},
type = {Technical report},
year = {2020},
url = {https://drive.google.com/file/d/1Hp0l_qtbxp1JxKJoGatdyuANSzQrpL0I/view?usp=drivesdk},
Expand Down Expand Up @@ -207,7 +207,7 @@ @article{Titus09
journal = {Environmental Research Letters},
number = {4},
pages = {044008},
title = {State and local governments plan for development of most land vulnerable to rising sea level along the {US} Atlantic coast},
title = {State and local governments plan for development of most land vulnerable to rising sea level along the {US} {A}tlantic coast},
volume = {4},
year = {2009},
url = {https://doi.org/10.1088/1748-9326/4/4/044008},
Expand Down Expand Up @@ -341,14 +341,14 @@ @techreport{EPA96
author = {{Environmental Protection Agency}},
institution = {Office of Water (4501F)},
number = {EPA 840-S-96-001},
title = {Watershed Approach Framework},
title = {{W}atershed {A}pproach {F}ramework},
year = {1996},
}

@inproceedings{Henningsen05,
address = {St. Petersburg, FL},
author = {Henningsen, B.},
booktitle = {Proceedings of the Tampa Bay Area Scientific Information Symposium (BASIS 4)},
booktitle = {Proceedings of the {Tampa} {Bay} {Area} {Scientific} {Information} {Symposium} ({BASIS} 4)},
editor = {Treat, S..F},
pages = {165-170},
publisher = {Tampa Bay Estuary Program},
Expand Down Expand Up @@ -497,7 +497,7 @@ @article{Lamb18
@incollection{Jaap90,
address = {Orlando, Florida, USA},
author = {Jaap, W. C. and Hallock, P.},
booktitle = {Ecosystems of Florida},
booktitle = {Ecosystems of {F}lorida},
editor = {Myers, R.L. and Ewel, J. J.},
pages = {574-618},
publisher = {University of Central Florida Press},
Expand All @@ -508,11 +508,11 @@ @incollection{Jaap90
@inproceedings{Ash05,
address = {St. Petersburg, Florida},
author = {Ash, T. and Runnels, R.},
booktitle = {Proceedings of the Tampa Bay Area Scientific Information Symposium (BASIS 4)},
booktitle = {Proceedings of the {T}ampa {B}ay {A}rea {S}cientific {I}nformation {S}ymposium ({BASIS} 4)},
editor = {Treat, S.F.},
pages = {179-182},
publisher = {Tampa Bay Estuary Program},
title = {Hard bottom habitats an overview of mapping and monitoring needs on epibenthic communities in {T}ampa {B}ay, {F}lorida},
title = {Hard bottom habitats: an overview of mapping and monitoring needs on epibenthic communities in {T}ampa {B}ay, {F}lorida},
year = {2005},
}

Expand Down Expand Up @@ -585,7 +585,7 @@ @article{zuErmgassen13
@incollection{Odum90,
address = {Orlando, Florida},
author = {Odum, W. E. and McIvor, C. C.},
booktitle = {Ecosystems of Florida},
booktitle = {Ecosystems of {F}lorida},
editor = {Myers, R. L. and Ewel, J. J.},
pages = {517-548},
publisher = {University of Central Florida Press},
Expand All @@ -607,7 +607,7 @@ @article{Berntness85
author = {Bertness, M. D.},
journal = {Ecology},
pages = {1042-1055},
title = {Fiddler Crab Regulation of \textit{Spartina alterniflora} production on a {N}ew {E}ngland salt marsh},
title = {Fiddler Crab Regulation of \textit{{S}partina alterniflora} production on a {N}ew {E}ngland salt marsh},
volume = {66},
year = {1985},
}
Expand All @@ -627,7 +627,7 @@ @techreport{Sherwood08
author = {Sherwood, E.},
institution = {Tampa Bay Estuary Program, St. Petersburg, Florida},
number = {#02-08},
title = {Tampa Bay tidal tributary habitat initiative: integrated summary document, {T}ampa {B}ay {E}stuary {P}rogram Tidal Tributaries Project Team},
title = {Tampa {B}ay tidal tributary habitat initiative: integrated summary document, {T}ampa {B}ay {E}stuary {P}rogram Tidal Tributaries Project Team},
type = {Technical Report},
year = {2008},
}
Expand All @@ -654,7 +654,7 @@ @article{Wessel22
author = {Wessel, M. R. and Leverone, J. R. and Beck, M. W. and Sherwood, E. T. and Hecker, J. and West, S. and Janicki, T. A.},
journal = {Estuaries and Coasts},
pages = {17-37},
title = {Developing a Water Quality Assessment Framework for Southwest {F}lorida Tidal Creeks},
title = {Developing a Water Quality Assessment Framework for {S}outhwest {F}lorida Tidal Creeks},
volume = {45},
year = {2022},
url = {https://doi.org/10.1007/s12237-021-00974-7},
Expand All @@ -674,7 +674,7 @@ @article{Smith18
@book{NOAA15,
address = {Silver Spring, Maryland},
author = {{National Oceanic and Atmospheric Administration}},
publisher = {National Oceanic and Atmospheric Administration},
publisher = {{National Oceanic and Atmospheric Administration}},
title = {Guidance for considering the use of living shorelines, Final guidance document prepared by the {NOAA} Living Shorelines Workgroup},
year = {2015},
}
Expand All @@ -691,7 +691,7 @@ @book{Meyers90
address = {Orlando, Florida},
author = {Meyers, R. L. and Ewel, J. J.},
publisher = {University of Central Florida Press},
title = {Ecosystems of Florida},
title = {Ecosystems of {F}lorida},
year = {1990},
}

Expand Down Expand Up @@ -786,16 +786,17 @@ @book{FDOT99
address = {Tallahassee, Florida},
author = {{Florida Department of Transportation}},
edition = {Third},
publisher = {FDOT Surveying and Mapping Office Geographic Mapping Section},
publisher = {{FDOT Surveying and Mapping Office Geographic Mapping Section}},
title = {{F}lorida land use, cover and forms classification system},
year = {1999},
}

@unpublished{SWFWMD14,
author = {{Southwest Florida Water Management District}},
note = {Updated: October 22},
note = {Updated: October 22, 2014},
title = {Photo interpretation key for land use classification},
year = {2014},
url={https://www31.swfwmd.state.fl.us/Documents/Photo_Interpretation_Key_2014.pdf}
}

@article{Osland12,
Expand Down Expand Up @@ -999,7 +1000,7 @@ @Article{Pebesma18

@software{Beck22,
author = {Marcus W. Beck and Gary E. Raulerson and Edward T. Sherwood},
title = {tbep-tech/hmpu-workflow: v1.2.0},
title = {{t}bep-tech/hmpu-workflow: v1.2.0},
year = {2022},
publisher = {Zenodo},
version = {v1.2.0},
Expand All @@ -1020,7 +1021,7 @@ @article{Greening14
}

@article{Lopez19,
title={Temperature mediates secondary dormancy in resting cysts of {\emph{Pyrodinium bahamense}} (Dinophyceae)},
title={Temperature mediates secondary dormancy in resting cysts of {\emph{Pyrodinium bahamense}} ({D}inophyceae)},
author={Lopez, Cary B. and Karim, Aliza and Murasko, Susan and Marot, Marci and Smith, Christopher G. and Corcoran, Alina A.},
year={2019},
journal={Journal of Phycology},
Expand All @@ -1047,7 +1048,7 @@ @article{Osland22
}

@article{Sheehan19,
title = {Blue {C}arbon: an Additional Driver for Restoring and Preserving Ecological Services of Coastal Wetlands in {T}ampa {B}ay ({F}lorida, {USA})},
title = {Blue carbon: an additional driver for restoring and preserving ecological services of coastal wetlands in {T}ampa {B}ay ({F}lorida, {USA})},
author = {Sheehan, Lindsey and Sherwood, Edward T. and Moyer, Ryan P. and Radabaugh, Kara R. and Simpson, Stefanie},
year = {2019},
month = {04},
Expand All @@ -1064,7 +1065,7 @@ @article{Sheehan19
@inproceedings{Jones09,
title={Reduced Impact Development Practices at “Restoration”},
author={Jones, Pierce H and Larson, Barbra C and Clark, Mark W},
booktitle={American Institute of Physics Conference Proceedings},
booktitle={American {I}nstitute of {P}hysics {C}onference {P}roceedings},
volume={1157},
number={1},
pages={151--161},
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5 changes: 5 additions & 0 deletions revision2/checklist.txt
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@@ -0,0 +1,5 @@
1. Manually remove figures from text, place in folder named as Figure1, Figure2, etc.
2. Change Figure header to Figure captions
3. Format table captions, verify correct order in text
4. Save as PDF for submission
6. Remove line numbers from supplement
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---
format:
docx:
reference-doc: my_styles.docx
number-sections: false
bibliography: ../refs.bib
csl: ../frontiers-in-ecology-and-evolution.csl
---

Below are our itemized responses to your comments. Thank you for your time in reviewing the content before a final decision is made.

Line 29: Remove “restoration planning” from the list of keywords as these words already appear in the title of your manuscript. You are welcome to replace them with (an)other word(s)

* __Response__: Removed and added "habitat loss".

Line 93/94: Replace the comma with “and, i.e. “…could occur and where…”

* __Response__: Replaced comma with "and".

Line 161: Add in brackets the hectare equivalent of “0.25 acres” seeing that all the results reported in your
manuscript is in hectares.

* __Response__: Added hectares equivalent.

Line 188: Consider replacing “taking” with “calculating”

* __Response__: Replaced.

Line 227: Add a full stop after “watershed”

* __Response__: Added.

Line 398: How do you align this sentence with your statement in Line 292-293 “This increase may represent improved ground-truthing and photointerpretation, rather than a true increase in coverage.” I suggest you rephrase the sentence in 3.1 to state that this increase may also be due to improved ground-truthing and photointerpretation (and leave out the second part).

* __Response__: The statement on line 292-293 was referring to oyster bars, not seagrass. The sentence was revised for clarity: "The increase in oyster bars may represent improved ground-truthing and photointerpretation."

Line 420-421: What do you mean by “in place of mangroves”? Do you mean that the increased anthropogenic water withdrawal favour mangrove forests? If so, then rephrase to make the meaning clearer.

* __Response__: Sentence was rephrased as "Anthropogenic water withdrawals have also reduced freshwater flows reaching tidal marshes, contributing to reductions in coverage of key species (e.g., *Juncus roemerianus*) that have favored mangroves (Raabe et al., 2012)."

Table 1: Increase size of column 1 so that the text does not run into the 2nd column

* __Response__: Done.

Table 5: Please explain in the title, table or in the text what you mean by “out-decade”. Also be consistent in the use of “out-decade” vs “out decade” in the table.

* __Response__: Revised to "each decade".

References (Line 600 to end): Please double check the titles of the manuscripts as several references do not contain capitals in their titles, e.g.

Line 604: tampa bay

Line 609: rio grande and mexico

Line 615: spartina

Line 626: california

* __Response__: Corrected all references where capitals were needed.


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