QATrack+ is an open source program for managing the quality control program of radiotherapy and diagnostic imaging clinics.

The Fuzzy Labs guide to the universe of open source MLOps

A graphical user interface for distributed data processing of high throughput genomics

PyRaDiSe: A Python package for DICOM-RT-based auto-segmentation pipeline construction and DICOM-RT data conversion

Solution that I provided to the 2020 challenge organized by Collège de France and Ecole Normale Supérieure of Paris. I finished 2nd out of the 98 teams/participants that participated.

Image processing tools for radiomics analysis

A game theoretic approach to explain the output of any machine learning model.

Low Dimensional Radiotherapy [PMB'23]

Opensource radiation treatment planning system in Python [AAPM'23]

Scripts for data processing

YOLOv3 in PyTorch > ONNX > CoreML > TFLite

YOLOv5 🚀 in PyTorch > ONNX > CoreML > TFLite

NEW - YOLOv8 🚀 in PyTorch > ONNX > OpenVINO > CoreML > TFLite

perivascular space segmentation

repository for Human Action Recognition using Multi-view Cameras (CCAM_E-055 Project)

Medical Image Radiomics Processor

Lung cancer screening radiomics

Box SDK for Python

Official Pytorch implementation of GGDR (ECCV 2022)

Clinically-Interpretable Radiomics [MICCAI'22, CMPB'21]

Clinically-Interpretable Radiomics [MICCAI'22, CMPB'21]

Interpretable convolutional neural networks on multi-omics data predict long-term survival in glioblastoma

personal toolbox for lidc-idri dataset / lung cancer / nodule

A basic framework for pulmonary nodule detection and characterization in CT

Documentation for CutiePi tablet

An image analysis library for medical physics

dcmqi (DICOM for Quantitative Imaging) is a free, open source C++ library for conversion between imaging research formats and the standard DICOM representation for image analysis results