git
conda
- Clone repo and install python packages
git clone <this-repo>
cd path/
conda env create -f environment.yml
source activate slide-by-slide
- Generate image tiles and thumbnails:
mkdir tiles/
mv <image-file> tiles/
python dzi.py tiles/<image-file>
python thumbgen.py tiles/<image-file>
- Add image paths to server.py.
- Run:
python server.py
- Load slide data from JSON rather than hardcoded in server.py