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trec_eval.py
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trec_eval.py
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import pandas as pd
import tempfile
import os
import copy
from typing import Dict, Tuple
import pytrec_eval
def trec_eval(qrels: Dict[str, Dict[str, int]],
results: Dict[str, Dict[str, float]],
k_values: Tuple[int] = (10, 50, 100, 200, 1000)) -> Dict[str, float]:
ndcg, _map, recall = {}, {}, {}
for k in k_values:
ndcg[f"NDCG@{k}"] = 0.0
_map[f"MAP@{k}"] = 0.0
recall[f"Recall@{k}"] = 0.0
map_string = "map_cut." + ",".join([str(k) for k in k_values])
ndcg_string = "ndcg_cut." + ",".join([str(k) for k in k_values])
recall_string = "recall." + ",".join([str(k) for k in k_values])
evaluator = pytrec_eval.RelevanceEvaluator(qrels, {map_string, ndcg_string, recall_string})
scores = evaluator.evaluate(results)
for query_id in scores:
for k in k_values:
ndcg[f"NDCG@{k}"] += scores[query_id]["ndcg_cut_" + str(k)]
_map[f"MAP@{k}"] += scores[query_id]["map_cut_" + str(k)]
recall[f"Recall@{k}"] += scores[query_id]["recall_" + str(k)]
def _normalize(m: dict) -> dict:
return {k: round(v / len(scores), 5) for k, v in m.items()}
ndcg = _normalize(ndcg)
_map = _normalize(_map)
recall = _normalize(recall)
all_metrics = {}
for mt in [ndcg, _map, recall]:
all_metrics.update(mt)
return all_metrics
def get_qrels_file(name):
THE_TOPICS = {
'dl19': 'dl19-passage',
'dl20': 'dl20-passage',
'covid': 'beir-v1.0.0-trec-covid-test',
'arguana': 'beir-v1.0.0-arguana-test',
'touche': 'beir-v1.0.0-webis-touche2020-test',
'news': 'beir-v1.0.0-trec-news-test',
'scifact': 'beir-v1.0.0-scifact-test',
'fiqa': 'beir-v1.0.0-fiqa-test',
'scidocs': 'beir-v1.0.0-scidocs-test',
'nfc': 'beir-v1.0.0-nfcorpus-test',
'quora': 'beir-v1.0.0-quora-test',
'dbpedia': 'beir-v1.0.0-dbpedia-entity-test',
'fever': 'beir-v1.0.0-fever-test',
'robust04': 'beir-v1.0.0-robust04-test',
'signal': 'beir-v1.0.0-signal1m-test',
}
name = THE_TOPICS[name]
name = name.replace('-test', '.test')
name = 'data/label_file/qrels.' + name + '.txt'
return name
def remove_duplicate(response):
new_response = []
for c in response:
if c not in new_response:
new_response.append(c)
else:
print('duplicate')
return new_response
def clean_response(response: str):
new_response = ''
for c in response:
if not c.isdigit():
new_response += ' '
else:
try:
new_response += str(int(c))
except:
new_response += ' '
new_response = new_response.strip()
return new_response
class EvalFunction:
@staticmethod
def receive_responses(rank_results, responses, cut_start=0, cut_end=100):
print('receive_responses', len(responses), len(rank_results))
for i in range(len(responses)):
response = responses[i]
response = clean_response(response)
response = [int(x) - 1 for x in response.split()]
response = remove_duplicate(response)
cut_range = copy.deepcopy(rank_results[i]['hits'][cut_start: cut_end])
original_rank = [tt for tt in range(len(cut_range))]
response = [ss for ss in response if ss in original_rank]
response = response + [tt for tt in original_rank if tt not in response]
for j, x in enumerate(response):
rank_results[i]['hits'][j + cut_start] = {
'content': cut_range[x]['content'], 'qid': cut_range[x]['qid'], 'docid': cut_range[x]['docid'],
'rank': cut_range[j]['rank'], 'score': cut_range[j]['score']}
return rank_results
@staticmethod
def write_file(rank_results, file):
print('write_file')
with open(file, 'w') as f:
for i in range(len(rank_results)):
rank = 1
hits = rank_results[i]['hits']
for hit in hits:
f.write(f"{hit['qid']} Q0 {hit['docid']} {rank} {hit['score']} rank\n")
rank += 1
return True
@staticmethod
def trunc(qrels, run):
qrels = get_qrels_file(qrels)
# print(qrels)
run = pd.read_csv(run, delim_whitespace=True, header=None)
qrels = pd.read_csv(qrels, delim_whitespace=True, header=None)
run[0] = run[0].astype(str)
qrels[0] = qrels[0].astype(str)
qrels = qrels[qrels[0].isin(run[0])]
temp_file = tempfile.NamedTemporaryFile(delete=False).name
qrels.to_csv(temp_file, sep='\t', header=None, index=None)
return temp_file
@staticmethod
def main(args_qrel, args_run):
args_qrel = EvalFunction.trunc(args_qrel, args_run)
assert os.path.exists(args_qrel)
assert os.path.exists(args_run)
with open(args_qrel, 'r') as f_qrel:
qrel = pytrec_eval.parse_qrel(f_qrel)
with open(args_run, 'r') as f_run:
run = pytrec_eval.parse_run(f_run)
all_metrics = trec_eval(qrel, run, k_values=(1, 5, 10))
print(all_metrics)
return all_metrics
if __name__ == '__main__':
EvalFunction.main('dl19', 'ranking_results_file')