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Bioinformatics 101 tool for counting unique k-length substrings in DNA

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suchapalaver/krust

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Run krust on the test data, searching for kmers of length 5 across all sequences, like this:

$ cargo run --release 5 cerevisae.pan.fa > output.tsv

or, searching for kmers of length 21:

$ cargo run --release 21 cerevisae.pan.fa > output.tsv