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@som-shahlab

som-shahlab

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  1. medalign medalign Public

    MedAlign is a clinician-generated dataset for instruction following with electronic medical records.

    90 9

  2. ehrshot-benchmark ehrshot-benchmark Public

    A benchmark for few-shot evaluation of foundation models for electronic health records (EHRs)

    Jupyter Notebook 142 10

  3. femr femr Public

    FEMR (Framework for Electronic Medical Records) provides tooling for large-scale, self-supervised learning using electronic health records

    Python 119 15

  4. trove trove Public

    Weakly supervised medical named entity classification

    Python 70 21

  5. meds_reader meds_reader Public

    C++ 15

Repositories

Showing 10 of 50 repositories
  • long_context_clues Public

    Taking off-the-shelf HF models and training them on EHR data

    som-shahlab/long_context_clues’s past year of commit activity
    Jupyter Notebook 6 0 0 0 Updated Dec 24, 2024
  • femr Public

    FEMR (Framework for Electronic Medical Records) provides tooling for large-scale, self-supervised learning using electronic health records

    som-shahlab/femr’s past year of commit activity
    Python 119 Apache-2.0 15 3 2 Updated Dec 23, 2024
  • meds_reader Public
    som-shahlab/meds_reader’s past year of commit activity
    C++ 15 Apache-2.0 0 0 0 Updated Dec 18, 2024
  • shahlab-blog Public Forked from oboy-1/shahlab-website

    Shah Lab Jekyll website

    som-shahlab/shahlab-blog’s past year of commit activity
    HTML 0 MIT 1 0 0 Updated Dec 11, 2024
  • factehr Public
    som-shahlab/factehr’s past year of commit activity
    Python 3 0 0 0 Updated Dec 9, 2024
  • ehrshot-benchmark Public

    A benchmark for few-shot evaluation of foundation models for electronic health records (EHRs)

    som-shahlab/ehrshot-benchmark’s past year of commit activity
    Jupyter Notebook 142 Apache-2.0 10 3 0 Updated Nov 21, 2024
  • meds_reader_paper_code Public
    som-shahlab/meds_reader_paper_code’s past year of commit activity
    C++ 0 0 0 0 Updated Nov 9, 2024
  • mimic_tutorial Public
    som-shahlab/mimic_tutorial’s past year of commit activity
    Python 3 0 0 0 Updated Oct 9, 2024
  • medalign-website Public

    Landing page and website for the MedAlign project

    som-shahlab/medalign-website’s past year of commit activity
    HTML 0 MIT 2 0 2 Updated Oct 7, 2024
  • INSPECT_public Public

    INSPECT dataset/benchmark paper, accepted by NeurIPS 2023

    som-shahlab/INSPECT_public’s past year of commit activity
    Python 25 Apache-2.0 2 1 0 Updated Aug 27, 2024
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