Note: SNCosmo uses Semantic Versioning for its version numbers. Specifically, this means that code written for sncosmo v1.0 will continue to work with any v1.x version. However, exact results may differ between versions in the 1.x series. (For example, due to changes in integration method.)
Major Changes & Additions:
- Add support for Numpy 2.0 (#398)
- Add non-radially varability to bandpasses (#400)
- Adds hdf5 dependancy (#400)
Minor Changes:
- Improve testing (#402)
- Add SkyMapper filters
- Add Nugent Type Ia Super-Chandra model from Fitz Axen and Nugent, (2023) ApJ, v. 953, p. 13
- Drop support for Python 3.8
- New add_effect for G10 and C11 SNIa intrinsic scatter models (#378)
- Salt2 ColorLaw function correction (#389)
- Fix issue with Python 3.12. Added dependency, looseversion, to replace removed distutil module (#387).
- Add ultrasat_ bandpasses (#381).
.._ultrasat: https://www.weizmann.ac.il/ultrasat/
Major Changes:
- Dropped support for Python <3.7 (#361)
- Add phase dependence option to PropagationEffect (#359)
Additions & Improvements:
- Add retrained SALT2 models from the DES and Pantheon+ teams (#355)
- Add TESS filter (#357)
- Add P22 SALT3-NIR model (#350)
- Updated SALT3 input calibration (#339)
- Add Gaia filters (#351)
- Improvements to code management
- Add 2MASS filters (#338)
- Add ATLAS filters (#336)
- New zeropoint alias for improved SNANA compatibility (#318)
- Add Roman filters (#218, #322)
- Add the ability to a use SNANA co-add simlibs (#247)
- Fix file paths for Windows users (#324)
- Fix the builtins with poor spline options (#203, #328, #329)
- Various improvements to code and repo management
This release mostly involves modernizing the SNCosmo build system.
- Add Pan-STARRS1 bandpasses (#212)
- Added support for wheels which should now be automatically uploaded to PyPI for any new release (#304).
- Fixed the Zenodo integration. New SNCosmo releases should now automatically be archived to Zenodo.
- Moved citations to the new CITATION.cff format. GitHub and Zenodo will now provide BibTeX entries that can be used to cite SNCosmo (#302).
- Update to the emcee version 3 API. Now only compatible with emcee>=3.
- Migrate from Travis CI to GitHub Actions for continuous integration/tests (#293).
- Bugfixes:
- Fixed the implementation of the SALT3 error model (#300).
- Fixed numpy type deprecations.
- Fixed the documentation for models (#299).
- Add SALT3 model from Kenworthy et al. (2021)
- Various documentation fixes
- Add SUGAR model from Leget et al. (2020)
- Add support for the iminuit 2.0 API (#291).
- Update tox to work with any version of Python 3.
- Bugfixes:
- Fix flatten_result bug due to API change (#285).
- Add Swift UVOT bandpasses.
- Bugfixes:
- Fix segfaults in bicubic interpolation.
- Add core-collapse models from Vincenzi et al. (2019)
- New Spectrum class to handle processing and fitting spectral observations.
- Removed appveyor builds.
- Bugfixes:
- Prevent segfaults in light curve fitting when the minuit fit fails.
- Add ZTF transmission functions
- Bugfixes
- Corrected pyproject.toml; should help cases where the wrong numpy version was being installed.
- Remove all references to the six package
- Fix accidental mutation of
bounds
inputs infit_lc
andmcmc_lc
.
This version is the same as v1.8, with the exception that Python 2 support has been removed, and deprecated functions and attributes have been removed. These were deprecated in v1.5.0 (released April 2017) or before.
On Python 2, pip should automatically install sncosmo v1.8 still. If not,
specify sncosmo<2.0.0
.
Minor changes:
- The
salt2-h17
source model has been renamed tosalt2-extended-h17
to make clearer its relation tosalt2-extended
. It is still available under the old name for backwards compatibility.
- Fix bug in download location of
snana-*
models latest versions, introduced in v1.8.0.
- Fix bug in download location of
salt2-extended
model latest version, introduced in v1.8.0.
- Add version 2.0 of many
snana-...
built-in core-collapse models, based on Pierel et al. 2018 (pull request 229). - Bugfixes:
- Fix compatibility with scipy 1.3+ by removing outdated import statements (pull request 238).
- Fix issue affecting optimization of models with free propagation effects (pull request 236).
- Add SNEMO2, SNEMO7, SNEMO15 source models from Saunders et al. (2018) to built-ins.
- Add Hounsell et al. (2017) SALT2 model to built-ins.
- Add
remote_timeout
configuration option. - Build system: remove build-time dependency on astropy helpers.
- Bugfixes:
- Correctly delete empty files created when a download fails.
- Use pseudo-inverse when inverting covariance matrix for increased stability.
- Fix an issue with pickling on Cython 0.26+.
- Fixed problem where
data['fluxcov']
was unintentionally being modified in-place when passed tofit_lc
. - Fixed problem where
'fluxcov'
not recognized as a valid name for covariance column in data infit_lc
.
This is a major new release. The highlight is really close compatibility of
the SALT2 model and fitting procedure with snfit
, the "official" SALT2
fitter.
SALT2Source
: Internal interpolation scheme ofSALT2Source
updated to matchsnfit
implementation exactly. Test suite now tests againstsnfit
implementation.fit_lc()
:- Handling of model covariance updated to match that of
snfit
: model covariance is fixed for each fit and fit is repeated until convergence. - New arguments
phase_range
andwave_range
. If given, data outside this range will be discarded after an initial fit and additional fits will be performed until convergence. Withphase_range=(-15., 45.)
andwave_range=(3000., 7000.)
, behavior approximates that of snfit with default arguments. - Added support for covariance in photometric data measurements, and
this covariance is used in
fit_lc()
if present. Covariance is stored as a'fluxcov'
column in the table of measurements. - Result includes two new attributes:
data_mask
, a boolean array indicating which rows in the input data were used in the final fit (since multiple fits might be performed), andnfit
, the number of fits performed. - New argument
warn
can be set to False to turn off warnings about dropping bands outside model wavelength range.
- Handling of model covariance updated to match that of
read_lc()
:Added support for reading snfit-format "covmat" files into a table of photometry:
>>> data = read_lc('filename', format='salt2', read_covmat=True) >>> data['Fluxcov'].shape == (len(data), len(data)) True
New keyword argument
expand_bands
. When True, the returned band column will containBandpass
objects instead of strings. (Strings converted to bandpass objects usingsncosmo.get_bandpass()
.) This is particularly useful for position-dependent bandpasses in the salt2 file format, such asmegacampsf
:read_lc()
reads the position from the header and feeds the position toget_bandpass()
to get a Bandpass object for the correct position.
Built-in bandpasses and magnitude systems: Many new built-in bandpasses and magnitude systems.
Configuration: The environment variable
SNCOSMO_DATA_DIR
can be used to set the path to the data directory. If set, it takes precedence over thedata_dir
variable in the configuration file ($HOME/.astropy/config/sncosmo.cfg
).
SFD98Map
andget_ebv_from_map
deprecated in favor of separate package sfdmap which has vastly improved performance (200x faster) for the typical case of scalar coordinates in ICRS frame.animate_source()
deprecated. This is a "fun extra" that is difficult to test and no longer seems to work.- Cython implementation of extinction functions has been factored out into
a separate Python module called
extinction
, which is now a dependency. Model.bandflux()
andSource.bandflux()
now integrate on a fixed wavelength grid of 5 angstroms regardless of the wavelength grid of the bandpass. This will result in small differences in results from previous sncosmo versions.- The internal (publicly undocumented)
Spectrum
class now acts more likeModel
; in particular, itsbandflux()
method now behaves the same way. AsSpectrum
backsSpectralMagSystem
, this makes the integration of models and zeropoint spectra more consistent. - Experimental (non-public) support for aliases for bandpasses,
such as
'SDSS::g'
for'sdssg'
. - Sources now use cubic rather than quadratic spline interpolation internally.
Model.source_peakmag()
andModel.set_source_peakmag()
added as convenience functions forModel.source.peakmag()
andModel.source.set_peakmag()
respectively.- [Bugfix] Fixed missing import of
math
module inmcmc_lc()
when using thepriors
keyword. [Backported to v1.3.1] [#143]
This is mostly a bugfix release, but it also drops support for Python 2.6. Python 2.7 is now the minimum supported Python version.
Updates for compatibility with AstroPy 1.2.
The registry now handles subclasses more robustly. For example, if
magsys
is an instance ofSpectralMagSystem
, the following used to fail:sncosmo.register(magsys, 'name') sncosmo.get_magsystem('name')
Now this works. [#132]
[Bugfix]
SALT2Source
had a bug under Python 3 (only) yielding drastically wrong fluxes. Python 2 was not affected. [#138]
[API change] Registry functions moved to the top-level namespace, as follows:
sncosmo.registry.register()
->sncosmo.register()
sncosmo.registry.register_loader()
->sncosmo.register_loader()
sncosmo.registry.retrieve()
-> deprecated, use class-specific functions such assncosmo.get_bandpass()
.
The old import paths will still work for backwards compatibility.
nest_lc()
now uses thenestle
module under the hood. A new keywordmethod
is available which selects different sampling methods implemented bynestle
. The new methods provide potential efficiency gains.The MLCS2k2 model is now available as a built-in Source, with the name
'mlcs2k2'
.Bandpasses from the Carnegie Supernova Project added to built-ins.
In
realize_lcs()
, a newscatter
keyword makes adding noise optional.[Bugfix] Fix built-in Bessell bandpass definitions, which were wrong by a term proportional to inverse wavelength. This was due to misinterpretation of the trasmission units. [backported to v1.1.1] [#111]
This is a mostly bugfix release with more solid support for Python 3.
- Added
Model.color()
method. - Remove
loglmax
from result ofnest_lc()
, which was not officially documented or supported. Usenp.max(res.logl)
instead. - Fixed bug that caused non-reproducible behavior in
nest_lc()
even whennumpy.random.seed()
was called directly beforehand. [#102] - Fixed file I/O problems on Python 3 related to string encoding. [#83, #85]
- Fixed problem with SDSS bandpasses being stored as integers internally, preventing them from being used with models with dust. [#100, #101]
- Fixed problem where built-in source name and version strings were being dropped. [#82]
- Minor doc fixes.
- [API change] The API of
mcmc_lc
has changed significantly - (the function was marked experimental in previous release).
- [API change] The API of
- [Deprecation] In result of
fit_lc
,res.cov_names
changed tores.vparam_names
. - [Deprecation] In result of
nest_lc
,res.param_names
changed tores.vparam_names
. This is for compatibility between the results offit_lc
andnest_lc
. [#30] - [Deprecation] Deprecate
flatten
keyword argument infit_lc()
in favor of explicit use offlatten_result()
function. - Many new built-in models.
- Many new built-in bandpasses.
- New remote data fetching system.
- SALT2 model covariance available via
Model.bandfluxcov()
method andmodelcov=True
keyword argument passed tofit_lc
. - New simulation function,
zdist
, generates a distribution of redshifts given a volumetric rate function and cosmology. - New simulation function,
realize_lcs
, simulates light curve data given a model, parameters, and observations. - Add color-related keyword arguments to
plot_lc()
. - Add
tighten_ylim
keyword argument toplot_lc()
. - Add
chisq()
function and use internally infit_lc()
. - Add
SFD98Map
class for dealing with SFD (1998) dust maps persistently so that the underlying FITS files are opened only once. - Update
get_ebv_from_map()
to work with new SkyCoord class inastropy.coordinates
available in astropy v0.3 onward. Previously, this function did not work with astropy v0.4.x (where older coordinates classes had been removed). - Update to new configuration system available in astropy v0.4 onward. This makes this release incompatible with astropy versions less than 0.4.
- Now compatible with Python 3.
- Increased test coverage.
- Numerous minor bugfixes.
This is non-backwards-compatible release, due to changes in the way models are defined. These changes were made after feedback on the initial design.
The most major change is a new central class Model
used throughout
the pacakge. A Model
instance encompasses a Source
and zero or
more PropagationEffect
instances. This is so that different
source models (e.g., SALT2 or spectral time series models) can be
combined with arbitrary dust models. The best way to think about this
is Source
and PropagationEffect
define the rest-frame behavior
of a SN and dust, and a Model
puts these together to determine the
observer-frame behavior.
- New classes:
sncosmo.Model
: new main container classsncosmo.Source
: replaces existingModel
sncosmo.TimeSeriesSource
: replaces existingTimeSeriesModel
sncosmo.StretchSource
: replaces existingStretchModel
sncosmo.SALT2Source
: replaces existingSALT2Model
sncosmo.PropagationEffect
sncosmo.CCM89Dust
sncosmo.OD94Dust
sncosmo.F99Dust
- New public functions:
sncosmo.read_griddata_ascii
: Read file withphase wave flux
rowssncosmo.read_griddata_fits
sncosmo.write_griddata_fits
sncosmo.nest_lc
: Nested sampling parameter estimation of SN modelsncosmo.simulate_vol
(EXPERIMENTAL): simulation convenience function.
- Built-ins:
- updated SALT2 model URLs
- added SALT2 version 2.4 (Betoule et al 2014)
- Improvements to
sncosmo.plot_lc
: flexibility and layout - Many bugfixes
This is a release with mostly bugfixes but a few new features, designed to be backwards compatible with v0.2.0 ahead of API changes coming in the next version.
New Functions:
sncosmo.get_ebv_from_map
: E(B-V) at given coordinates from SFD map.sncosmo.read_snana_ascii
: Read SNANA ascii format files.sncosmo.read_snana_fits
: Read SNANA FITS format files.sncosmo.read_snana_simlib
: Read SNANA ascii "SIMLIB" files.
registry is now case-independent. All of the following now work:
sncosmo.get_magsystem('AB') sncosmo.get_magsystem('Ab') sncsomo.get_magsystem('ab')
Photometric data can be unordered in time. Internally, the data are sorted before being used in fitting and typing.
Numerous bugfixes.
Added SN 2011fe Nearby Supernova Factory data to built-in models as
'2011fe'
Previously "experimental" functions now included:
sncosmo.fit_lc
(previouslysncosmo.fit_model
)sncosmo.read_lc
(previouslysncosmo.readlc
)sncosmo.write_lc
(previouslysncosmo.writelc
)sncosmo.plot_lc
(previouslysncosmo.plotlc
)
New functions:
sncosmo.load_example_data
: Example photometric data.sncosmo.mcmc_lc
: Markov Chain Monte Carlo parameter estimation.sncosmo.animate_model
: Model animation using matplotlib.animation.
Fitting:
sncosmo.fit_lc
now uses the iminuit package for minimization by default. This requires the iminuit package to be installed, but the old minimizer (from scipy) can still be used by setting the keywordmethod='l-bfgs-b'
.Plotting: Ability to plot model synthetic photometry without observed data, using the syntax:
>>> sncosmo.plot_lc(model=model, bands=['band1', 'band2'])
Photometric data format: Photometric data format is now more flexible, allowing various names for table columns.
Initial release.