Commits

Branch selector

 796b24c

User selector

All users

Datepicker

All time

Commit History

Commits on Feb 12, 2022

• Factor tools

  smarco

  committed
  796b24c

  Copy full SHA for 796b24c

• - Refactored

  smarco

  committed
  b7d3543

  Copy full SHA for b7d3543

• Added utest. Fixed small regression.

  smarco

  committed
  caecb2f

  Copy full SHA for caecb2f

• Fixed edit bug & added missing indel.h

  smarco

  committed
  cc729f8

  Copy full SHA for cc729f8

• Factored offloading backtraces

  smarco

  committed
  8c7ac9f

  Copy full SHA for 8c7ac9f

• Fixed ultra-low memory bug

  smarco

  committed
  8aecf27

  Copy full SHA for 8aecf27

• - Updated display WF

  Show description for f2919ac
  smarco

  committed
  f2919ac

  Copy full SHA for f2919ac

Commits on Feb 11, 2022

• - typo :: gap_lineal => gap_linear

  Show description for e0dcb68
  smarco

  committed
  e0dcb68

  Copy full SHA for e0dcb68

Commits on Feb 10, 2022

• Fixed WFA bug on low-memory modes (corner case on batch-marking CIGAR blocks)

  smarco

  committed
  0b1f66e

  Copy full SHA for 0b1f66e

Commits on Feb 6, 2022

• - Renamed memory modes (less confusing)

  Show description for 4862587
  smarco

  committed
  4862587

  Copy full SHA for 4862587

• - Implemented output-lite/large (for debugging)

  Show description for d8f041c
  smarco

  committed
  d8f041c

  Copy full SHA for d8f041c

Commits on Feb 5, 2022

• - Fixed lamda support using low-memory modes

  Show description for 185524a
  smarco

  committed
  185524a

  Copy full SHA for 185524a

Commits on Feb 4, 2022

• Removed the need to compare (at the end) pattern and text on cigar-backtrack low-mem mode

  smarco

  committed
  06bb313

  Copy full SHA for 06bb313

• - Fixed lambda bugs

  Show description for 12fe311
  smarco

  committed
  12fe311

  Copy full SHA for 12fe311

Commits on Feb 1, 2022

• - Adjusted memory-modes and max-memory consumption

  Show description for ec7d47b
  smarco

  committed
  ec7d47b

  Copy full SHA for ec7d47b

Commits on Jan 27, 2022

• - Implemented low-memory modes

  Show description for ccdb3c9
  smarco

  committed
  ccdb3c9

  Copy full SHA for ccdb3c9

Commits on Jan 25, 2022

• - Implemented BT-buffer compact() using bitmap

  Show description for df214dd
  smarco

  committed
  df214dd

  Copy full SHA for df214dd

Commits on Jan 22, 2022

• - Implemented max-but-buffer bound to reduce offloading frequency

  Show description for 8ff9731
  smarco

  committed
  8ff9731

  Copy full SHA for 8ff9731

Commits on Jan 20, 2022

• Fixed sequence padding sysmbols to ?/! (don't collide with other symbols)

  smarco

  committed
  5ec9108

  Copy full SHA for 5ec9108

Commits on Sep 3, 2021

• - Rewrite compute-next(low-mem) kernel to generate less instructions

  Show description for 41ad127
  smarco

  committed
  41ad127

  Copy full SHA for 41ad127

Commits on Aug 16, 2021

• - Forced that every wf-offset out-of-dp-table is nullify

  Show description for 9352e61
  smarco

  committed
  9352e61

  Copy full SHA for 9352e61

Commits on Aug 14, 2021

• Implemented wavefrom trim to discard wf-offsets out of the dynamic programming table

  smarco

  committed
  f87a133

  Copy full SHA for f87a133

• BugFix. BT-Buffer memory leak

  smarco

  committed
  f55e72f

  Copy full SHA for f55e72f

• Fixed bug. Null WF-positions stored in BT-buffer causing uninitialized mem problem during compacting

  smarco

  committed
  5e771ba

  Copy full SHA for 5e771ba

Commits on Aug 13, 2021

• explicit cast to make C++ happy

  AndreaGuarracino

  committed
  a526fbf

  Copy full SHA for a526fbf

• Implemented BT-buffer compacting to reduce mem usage on low-memory mode

  smarco

  committed
  c02877c

  Copy full SHA for c02877c

• Refactor and Merged with plot generation

  smarco

  committed
  5f3441b

  Copy full SHA for 5f3441b

Commits on Aug 6, 2021

• Fixed reduce/adaptive bug on backtrace. Removed lo_base/hi_base sentinels

  smarco

  committed
  11f3826

  Copy full SHA for 11f3826

Commits on Jun 28, 2021

• Added ends-free functionality

  smarco

  committed
  61ab973

  Copy full SHA for 61ab973

Commits on Jun 21, 2021

• Added examples

  smarco

  committed
  e5f1ed7

  Copy full SHA for e5f1ed7

• Added reap function and memory control hooks. Added max-score/max-mem limits

  smarco

  committed
  65eb506

  Copy full SHA for 65eb506

Commits on Jun 13, 2021

• First WFA (v2.0) commit

  smarco

  committed
  2a0d373

  Copy full SHA for 2a0d373

• Initial commit

  smarco

  authored
  ef41cd4

  Copy full SHA for ef41cd4