Test data to be used for automated testing with the ph-core pipelines

⚠️ Do not merge your test data to master! Each pipeline has a dedicated branch (and a special one for modules)

ph-core is a collection of high quality Nextflow pipelines with an focus on public health, following the template established by the nf-core community and tools. This repository contains various files for CI and unit testing of ph-core pipelines and infrastructure.

The principle for ph-core test data is as small as possible, as large as necessary. Please see the guidelines for more detailed information.

ph-core/test-datasets comes with documentation in the docs/ directory:

1. Add a new test dataset
2. Use an existing test dataset

Due the large number of large files in this repository for each pipeline, we highly recommend cloning only the branches you would use.

git clone <url> --single-branch --branch <pipeline/modules/branch_name>

To subsequently clone other branches¹

git remote set-branches --add origin [remote-branch]
git fetch