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122 Open 2,082 Closed
122 Open 2,082 Closed
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Issues list

Mini saltation JN.1.4 with S:N30K, V47I, R346T and Orf9b:L64P, (4, Hong Kong) JN.1.4 ORF9b S:30 S:47 S:346
#2204 opened Nov 6, 2024 by FedeGueli
KS.1.1.2/JN.1.11.1.X (likely KP.3.1.1) recombinant with a 4AA mini saltation (15, Ontario) FLiRT FLiRT is an Acronym for S:R346T + S:F456L Mini Saltation Mutations outside spike NSP13 NSP14 ORF9b recombinant S:22 S:59 S:1104
#2203 opened Nov 6, 2024 by FedeGueli
2
MC.16 subbranch with Orf9b:R47H and Orf1a:P1786L(68, 11 countries) KP.3.1.1 ORF9b
#2202 opened Nov 5, 2024 by Over-There-Is
1
NEW KP.3.1.1 + S:A435S with S:C1235F and Orf9b:R32L (12, 5 places)
#2201 opened Nov 5, 2024 by FedeGueli
XEC + ORF1b:P1664S, ORF1a:M1771V (101 mainly in Ontario) Mutations outside spike PLPro Small clusters ?? This label identifies lineages with very few sequences,allowing to track them for a couple of weeks XEC
#2200 opened Nov 4, 2024 by Fearuncle
5
LP.8 spike diversity: Branch 1 (57) and Branch 2 (8) plus their new sublineages with 475V, 679R , 22N LP.8 Multiple lineages N Glycan S:22 S:153 S:176 S:190 S:475 S:679
#2199 opened Nov 3, 2024 by FedeGueli
@corneliusroemer
6
MC.13 subbranch with Orf9b:V30A(65, 3 countries, mainly in US) MC.13 Orf6 ORF9b
#2198 opened Nov 2, 2024 by Over-There-Is
3
LB.1.3 subbranch with S:N185del, F186I and Orf1a:P4197S on Orf6:T10I branch(49, 4 countries in Americas) Apparently slow It means that a lineage is accumulating sequences slowly not that it is intrinsically slow. Deletions between S:180-190 it is an umbrella that collects lineages with mutations in the S:180-190 area of the NTD LB.1 S:185 S:186
#2197 opened Nov 2, 2024 by Over-There-Is
1
MC.1+Orf1a:I671V+S:A688V(19 seqs, 6 places) MC.1 S:688
#2196 opened Nov 2, 2024 by xz-keg
Another MC.1+S:A942S(37 seqs, 6 places) MC.1 S:942
#2195 opened Nov 2, 2024 by xz-keg
Suggestion to use SGTF as base for BA.2.86 seqs to handle S:68 mutations Usher Issues with usher related problems
#2194 opened Nov 1, 2024 by xz-keg
6
JN.1.67.1 / XDV.1.9.1 recombinant (2, CN-AH 1, DE-BY 1) Apparently slow It means that a lineage is accumulating sequences slowly not that it is intrinsically slow. Emerged in an undersampled area Actual infection toll may be much larger than number of sequences suggest recombinant CUBE recombinant of recombinant of recombinant of XBB*
#2193 opened Oct 30, 2024 by Over-There-Is
4
MC.1 subbranch with S:F4L and Orf1a:E977D(19, CA 16, US 3) MC.1 S:4
#2192 opened Oct 30, 2024 by Over-There-Is
XEL+S:478E( 5 seqs, 2 places) S:478 XEL
#2191 opened Oct 30, 2024 by xz-keg
2
Delta (21J) Sequence in Asturias Spain (1) + 3 likely artifacts (or coinfections) with part of it. Artifact? It seems artifact or not real. Delta recomb?
#2190 opened Oct 28, 2024 by Sinickle
@corneliusroemer
10
MC.16 +Orf1a:K1202N+ Orf7a:L5I acquired S:E654V (10, 7 Places) KP.3.1.1 S:654
#2187 opened Oct 27, 2024 by FedeGueli
1
KP.3.1.1 + S:Y265F mostly with Orf1a:S2104C (9, 6 Places in Europe) KP.3.1.1 S:265
#2186 opened Oct 27, 2024 by FedeGueli
MC.2.1+S:D1146G(69 seqs, 3 places) KP.3.1.1 s:1146
#2185 opened Oct 26, 2024 by xz-keg
KP.3.1.1+Orf1a:T3642I+S:A1026T( 8 seqs, 6 places) KP.3.1.1 S:1026
#2184 opened Oct 26, 2024 by xz-keg
XDV.1+S:V1264L(50 seqs, 10 places) Emerged in an undersampled area Actual infection toll may be much larger than number of sequences suggest S:1264 XDV.1
#2183 opened Oct 26, 2024 by xz-keg
2
XEC + 4 spike Mutations (K150R, K529E, S704L, L1104V (R)) 4 all in Czechia all different patients 704L Mini Saltation Rapid review needed Reversions S:150 S:529 S:1104
#2182 opened Oct 25, 2024 by Fearuncle
1
Another Kp.3.2.9 sublineage got S:S31del after C7267T (43, 6 Places recently in Ontario)
#2181 opened Oct 24, 2024 by FedeGueli
2
XEK branches Multiple lineages XEK
#2179 opened Oct 23, 2024 by Fearuncle
2 tasks
JN.1.4 Saltation [12 AA subs, 5 in Spike] (Hong Kong, 2 seq, 2 pts)
#2178 opened Oct 23, 2024 by ryhisner
1
New 31del-493E-1104L carrying Unknown/KP.3.1.1 recombinant (3, Ontario) recombinant S:31del S:102 S:493 S:702 S:1104
#2177 opened Oct 23, 2024 by FedeGueli
1
ProTip! Exclude everything labeled bug with -label:bug.