Updating PDFs of demos and paper, release notes and release numbering…

… ready for v1.1 release.
sanjobnth · Nov 13, 2014 · 2a36ac0 · 2a36ac0
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diff --git a/InfoDynamicsToolkit.pdf b/InfoDynamicsToolkit.pdf
diff --git a/build.xml b/build.xml
@@ -5,7 +5,7 @@
 	</description>
 
 	<!-- set global properties for this build -->
-	<property name="version" value="1.0"/>
+	<property name="version" value="1.1"/>
 	<property name="mainfilename" value="infodynamics"/>
 	<property name="jarplainname" value="${mainfilename}.jar" />
 	<property name="jarversiondistnamezip" value="${mainfilename}-jar-${version}.zip" />

diff --git a/demos/clojure/README-ClojureExamples.pdf b/demos/clojure/README-ClojureExamples.pdf
diff --git a/demos/java/README-SimpleJavaDemos.pdf b/demos/java/README-SimpleJavaDemos.pdf
diff --git a/demos/julia/README-JuliaExamples.pdf b/demos/julia/README-JuliaExamples.pdf
diff --git a/demos/octave/README-OctaveMatlabDemos.pdf b/demos/octave/README-OctaveMatlabDemos.pdf
diff --git a/demos/octave/SchreiberTransferEntropyExamples/README-SchreiberTeDemos.pdf b/demos/octave/SchreiberTransferEntropyExamples/README-SchreiberTeDemos.pdf
diff --git a/demos/python/README-PythonDemos.pdf b/demos/python/README-PythonDemos.pdf
diff --git a/demos/r/README-R_Demos.pdf b/demos/r/README-R_Demos.pdf
diff --git a/readme-template.txt b/readme-template.txt
@@ -1,5 +1,6 @@
 Java Information Dynamics Toolkit (JIDT)
-Copyright (C) 2012 Joseph T. Lizier
+Copyright (C) 2012-2014 Joseph T. Lizier
+Copyright (C) 2014 Joseph T. Lizier and Ipek Özdemir
 
 Version @VERSION@ (see release notes below)
 
@@ -83,6 +84,10 @@ Several sets of demonstration code are distributed with the toolkit:
 
    iii. demos/r -- basic examples on easily using the Java toolkit from R -- see description at http://code.google.com/p/information-dynamics-toolkit/wiki/R_Examples
 
+   iv. demos/julia -- basic examples on easily using the Java toolkit from Julia -- see description at http://code.google.com/p/information-dynamics-toolkit/wiki/JuliaExamples
+
+   v. demos/clojure -- basic examples on easily using the Java toolkit from Clojure -- see description at http://code.google.com/p/information-dynamics-toolkit/wiki/Clojure_Examples
+
  c. demos/octave/CellularAutomata -- using the Java toolkit to plot local information dynamics profiles in cellular automata; the toolkit is run under Octave or Matlab -- see description at http://code.google.com/p/information-dynamics-toolkit/wiki/CellularAutomataDemos
 
  d. demos/octave/SchreiberTransferEntropyExamples -- recreates the transfer entropy examples in Schreiber's original paper presenting this measure; shows the correct parameter settings to reproduce these results  -- see description at http://code.google.com/p/information-dynamics-toolkit/wiki/SchreiberTeDemos
@@ -101,7 +106,9 @@ Several sets of demonstration code are distributed with the toolkit:
 
 Please cite your use of this toolkit as:
 
-Joseph T. Lizier, "JIDT: An information-theoretic toolkit for studying the dynamics of complex systems", 2014, arXiv:1408.3270
+Joseph T. Lizier, "JIDT: An information-theoretic toolkit for studying the dynamics of complex systems", Frontiers in Robotics and AI 1:11, 2014; doi:10.3389/frobt.2014.00011
+
+A pre-print of this paper is distributed with this toolkit (InfoDynamicsToolkit.pdf) and is available at arXiv:1408.3270
 
 =============
    Notices
@@ -121,6 +128,16 @@ Notices for this software are found in the notices/JAMA directory.
  Release notes
 ===============
 
+v1.1 14/11/2014 at r566
+-----------------------
+Implemented Fast Nearest Neighbour Search for Kraskov-Stögbauer-Grassberger (KSG) estimators for MI, conditional MI, TE, conditional TE, AIS, Predictive info, and multi-information. This includes a general (multivariate) k-d tree implementation;
+Added multi-threading (using all available processors by default) for the KSG estimators -- code contributed by Ipek Özdemir;
+Added Predictive information / Excess entropy implementations for KSG, kernel and Gaussian estimators;
+Added R, Julia, and Clojure demos;
+Added Windows batch files for the Simple Java Demos;
+Added property for adding a small amount of noise to data in all KSG estimators;
+
+
 v1.0 14/8/2014 at r434
 ----------------------
 Added the draft of the paper on the toolkit to the release;