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NAMESPACE
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NAMESPACE
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# Generated by roxygen2: do not edit by hand
S3method("[",admixList)
S3method("[",structList)
S3method("[[",admixList)
S3method("[[",structList)
S3method(bestK,admixList)
S3method(bestK,structList)
S3method(getClusterAlleleFreqMat,admix)
S3method(getClusterAlleleFreqMat,struct)
S3method(getK,admix)
S3method(getK,struct)
S3method(getQ,admix)
S3method(getQ,struct)
S3method(plotBar,admix)
S3method(plotBar,matrix)
S3method(plotBar,struct)
S3method(plotFineStructDendro,fineStruct)
S3method(plotFineStructDendro,phylo)
S3method(plotMCMC,struct)
S3method(plotMCMC,structList)
S3method(plotMDS,admix)
S3method(plotMDS,matrix)
S3method(plotMDS,struct)
S3method(plotMultiK,admixList)
S3method(plotMultiK,list)
S3method(plotMultiK,structList)
S3method(plotTreeBar,admix)
S3method(plotTreeBar,matrix)
S3method(plotTreeBar,struct)
S3method(print,admix)
S3method(print,admixList)
S3method(print,fineStruct)
S3method(print,struct)
S3method(print,structList)
export(admix)
export(admixList)
export(averagePairWiseSimilarityH)
export(averageQ)
export(bestK)
export(clumpak)
export(clumpp)
export(exampleAdmixture)
export(exampleStructure)
export(fineStruct)
export(getClusterAlleleFreqMat)
export(getCompleteAlleleFreqMat)
export(getD)
export(getFitStats)
export(getK)
export(getMCMC)
export(getPosterior)
export(getQ)
export(loadAdmixture)
export(loadFineStructure)
export(loadStructure)
export(plotBar)
export(plotFineStructDendro)
export(plotMCMC)
export(plotMDS)
export(plotMultiK)
export(plotPWCoancestry)
export(plotPWCoincidence)
export(plotTreeBar)
export(runStructure)
export(simulateQ)
export(struct)
export(structList)
import(ggdendro)
import(ggplot2)
import(gridExtra)
import(iterpc)
import(stringr)
importFrom(MCMCpack,rdirichlet)
importFrom(combinat,permn)
importFrom(data.table,fread)
importFrom(data.table,melt)
importFrom(data.table,rbindlist)
importFrom(methods,is)
importFrom(parallel,detectCores)
importFrom(parallel,mcmapply)
importFrom(proxy,dist)
importFrom(proxy,simil)
importFrom(purrr,map)
importFrom(purrr,map_dbl)
importFrom(readr,read_lines)
importFrom(stats,ave)
importFrom(stats,cmdscale)
importFrom(stats,cutree)
importFrom(stats,hclust)
importFrom(stats,rnorm)
importFrom(stats,runif)
importFrom(stats,sd)
importFrom(stringr,str_extract)
importFrom(stringr,str_pad)
importFrom(stringr,str_split)
importFrom(stringr,str_split_fixed)