Unified knowledge-driven network inference from omics data

🍇 Ensmallen is the Rust/Python high-performance graph processing submodule of the GRAPE library.

A fast FASTQ filter program.

Python package to solve exact cover problems

Linux Studio Plugins Project

Gene Set Scoring on the Nearest Neighbor Graph (gssnng) for Single Cell RNA-seq (scRNA-seq) using AnnData h5ad files.

surround.vim: Delete/change/add parentheses/quotes/XML-tags/much more with ease

Org-mode like task logging & time tracking in Vim

🍪 A full-featured, hackable tiling window manager written and configured in Python (X11 + Wayland)

A neovim port of the high contrast noctis theme for VSCode.

Infer copy number variation (CNV) from scRNA-seq data. Plays nicely with Scanpy.

A Grammar of Graphics for Python

🔗 The fancy start screen for Vim.

Tools for working with BUS files

Patchwork for matplotlib: A subplot manager for intuitive layouts in matplotlib, seaborn, and plotnine.

UnseenEst algorithm

kallisto quantification of a cellranger-processed 10x experiment (its bamfile)

Python functions to read the kallisto-bustools format

Python code for handling various aspects of RNAseq data

Tools that come handy when working in scanpy all day long

Python module for plotting Venn diagrams of 2..6 sets

An artware browser add-on to protect privacy in web-search. By issuing randomized queries to common search-engines, TrackMeNot obfuscates your search profile(s) and registers your discontent with s…

Docker container for Illumina bcl2fastq

Python and Java bindings for the OpenSky Network REST API

Fast, flexible and easy to use probabilistic modelling in Python.

Autoencoder network for learning a continuous representation of molecular structures.

Gibbs samplers for hierarchical nonparametric Bayesian models

A python/numpy/cython implementation of dynamic time warping (DTW) for aligning time series.

Single-cell analysis in Python. Scales to >1M cells.