Skip to content
@qhgenomics

Genomics Cloud Compute

Popular repositories Loading

  1. abricate abricate Public

    Forked from tseemann/abricate

    🔎 💊 Mass screening of contigs for antimicrobial and virulence genes

    Perl

  2. nullarbor nullarbor Public

    Forked from tseemann/nullarbor

    💾 📃 "Reads to report" for public health and clinical microbiology

    Perl

  3. mlst mlst Public

    Forked from tseemann/mlst

    🆔 Scan contig files against PubMLST typing schemes

    Perl

  4. snippy snippy Public

    Forked from tseemann/snippy

    ✂️ ⚡ Rapid haploid variant calling and core genome alignment

    Perl

  5. prokka prokka Public

    Forked from tseemann/prokka

    ⚡ ♒ Rapid prokaryotic genome annotation

    Perl

  6. snp-dists snp-dists Public

    Forked from tseemann/snp-dists

    Pairwise SNP distance matrix from a FASTA sequence alignment

    C

Repositories

Showing 10 of 37 repositories
  • ngpipe Public

    Pipeline for typing Neisseria spp

    Python 0 GPL-3.0 1 8 0 Updated Feb 27, 2025
  • primer_cheq Public

    Tool for checking primer coverage and drift

    Python 0 MIT 0 0 0 Updated Jan 23, 2025
  • BacTraq Public

    SNP-based clustering with consistent naming.

    Python 0 0 0 0 Updated Jan 6, 2025
  • hello Public Forked from nextflow-io/hello

    Classic hello world script in Nextflow language

    Nextflow 0 Apache-2.0 119 0 0 Updated Nov 21, 2024
  • rnaseq-nf Public Forked from nextflow-io/rnaseq-nf

    A proof of concept of RNAseq pipeline

    Nextflow 0 Apache-2.0 105 0 0 Updated Nov 8, 2024
  • igv Public Forked from igvteam/igv

    Integrative Genomics Viewer. Fast, efficient, scalable visualization tool for genomics data and annotations

    Java 0 MIT 389 0 0 Updated Aug 24, 2022
  • samtools Public Forked from samtools/samtools

    Tools (written in C using htslib) for manipulating next-generation sequencing data

    C 0 587 0 0 Updated Aug 24, 2022
  • ResFinder Public
    Python 0 0 0 0 Updated May 18, 2022
  • MultiQC Public Forked from MultiQC/MultiQC

    Aggregate results from bioinformatics analyses across many samples into a single report.

    Python 0 GPL-3.0 617 0 0 Updated May 13, 2022
  • kraken2 Public Forked from DerrickWood/kraken2

    The second version of the Kraken taxonomic sequence classification system

    C++ 0 MIT 278 0 0 Updated May 11, 2022
View all repositories

People

This organization has no public members. You must be a member to see who’s a part of this organization.

Top languages

Loading…

Most used topics

Loading…