Calculate goodness of fit (r2_score) based on posterior expectation rather than posterior prediction
#659
Workflow file for this run
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| name: PyPI release | |
| on: | |
| workflow_dispatch: | |
| pull_request: | |
| branches: [main] | |
| push: | |
| branches: [main] | |
| release: | |
| types: [published] | |
| jobs: | |
| build: | |
| name: Build source distribution | |
| runs-on: ubuntu-latest | |
| steps: | |
| - uses: actions/checkout@v4 | |
| with: | |
| fetch-depth: 0 | |
| - uses: actions/setup-python@v5 | |
| with: | |
| python-version: 3.11 | |
| - name: Build the sdist and the wheel | |
| run: | | |
| pip install build | |
| python -m build | |
| - name: Check the sdist installs and imports | |
| run: | | |
| mkdir -p test-sdist | |
| cd test-sdist | |
| python -m venv venv-sdist | |
| venv-sdist/bin/python -m pip install ../dist/causalpy*.tar.gz | |
| echo "Checking import and version number (on release)" | |
| venv-sdist/bin/python -c "import causalpy; assert causalpy.__version__ == '${{ github.ref_name }}' if '${{ github.ref_type }}' == 'tag' else causalpy.__version__; print(causalpy.__version__)" | |
| cd .. | |
| - name: Check the bdist installs and imports | |
| run: | | |
| mkdir -p test-bdist | |
| cd test-bdist | |
| python -m venv venv-bdist | |
| venv-bdist/bin/python -m pip install ../dist/CausalPy*.whl | |
| echo "Checking import and version number (on release)" | |
| venv-bdist/bin/python -c "import causalpy; assert causalpy.__version__ == '${{ github.ref_name }}' if '${{ github.ref_type }}' == 'tag' else causalpy.__version__; print(causalpy.__version__)" | |
| cd .. | |
| - uses: actions/upload-artifact@v3 | |
| with: | |
| name: artifact | |
| path: dist/* | |
| test: | |
| name: Upload to Test PyPI | |
| permissions: | |
| id-token: write | |
| needs: [build] | |
| runs-on: ubuntu-latest | |
| if: github.event_name == 'release' && github.event.action == 'published' | |
| steps: | |
| - uses: actions/download-artifact@v3 | |
| with: | |
| name: artifact | |
| path: dist | |
| - uses: pypa/gh-action-pypi-publish@release/v1 | |
| with: | |
| skip_existing: true | |
| repository_url: https://test.pypi.org/legacy/ | |
| - uses: actions/setup-python@v5 | |
| with: | |
| python-version: 3.11 | |
| - name: Test pip install from test.pypi | |
| run: | | |
| # Give time to test.pypi to update its index. If we don't wait, | |
| # we might request to install before test.pypi is aware that it actually has the package | |
| sleep 5s | |
| python -m venv venv-test-pypi | |
| venv-test-pypi/bin/python -m pip install --index-url https://test.pypi.org/simple/ --extra-index-url https://pypi.org/simple causalpy | |
| echo "Checking import and version number" | |
| venv-test-pypi/bin/python -c "import causalpy; assert causalpy.__version__ == '${{ github.ref_name }}'" | |
| publish: | |
| environment: release | |
| permissions: | |
| id-token: write | |
| name: Upload release to PyPI | |
| needs: [build, test] | |
| runs-on: ubuntu-latest | |
| if: github.event_name == 'release' && github.event.action == 'published' | |
| steps: | |
| - uses: actions/download-artifact@v3 | |
| with: | |
| name: artifact | |
| path: dist | |
| - uses: pypa/gh-action-pypi-publish@release/v1 |