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Add support for ImSpector FLIM TIFF files #161

Merged
merged 5 commits into from
Dec 16, 2024
Merged

Add support for ImSpector FLIM TIFF files #161

merged 5 commits into from
Dec 16, 2024

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cgohlke
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@cgohlke cgohlke commented Dec 15, 2024 •
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Description

This PR adds a read_imspector_tiff function to the phasorpy.io module to read TCSPC image stacks and select metadata from ImSpector FLIM TIFF formatted files. The implementation is based on reverse engineering very few data files by the FLUTE project.

Closes #105.

Checklist

  • The pull request title and description are concise.
  • Related issues are linked in the description.
  • New dependencies are explained.
  • The source code and documentation can be distributed under the MIT license.
  • The source code adheres to code standards.
  • New classes, functions, and features are thoroughly tested.
  • New, user-facing classes, functions, and features are documented.
  • New features are covered in tutorials.
  • No files other than source code, documentation, and project settings are added to the repository.

@cgohlke cgohlke added the enhancement New feature or request label Dec 15, 2024
@cgohlke cgohlke self-assigned this Dec 15, 2024
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cgohlke commented Dec 15, 2024

The static code analysis failure is fixed in #160.

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cgohlke commented Dec 16, 2024

Hi @bruno-pannunzio : The code coverage "failures" are due to conditions for which we don't have test files.

@cgohlke cgohlke merged commit 02f7394 into phasorpy:main Dec 16, 2024
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@cgohlke cgohlke deleted the imspector_tiff branch December 16, 2024 16:15
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@bruno-pannunzio bruno-pannunzio bruno-pannunzio approved these changes

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Support ImSpector FLIM TIFF files
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@cgohlke @bruno-pannunzio