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Geomorph is a software package for performing all stages of geometric morphometric shape analysis of landmark points and curves in 2-and-3-dimensions as well as 3D surfaces in the R statistical com…
scDesign3 generates realistic in silico data for multimodal single-cell and spatial omics
Deciphering cell-cell communication from spatially resolved transcriptomic data at single-cell resolution with subgraph-based attentional graph neural network
Easy single cell analysis platform for enrichment
Interactively analyze single cell genomic data
Analysis for the Baysor paper
A docker image for converting docker images to singularity images.
Zotero extension that combats link rot by archiving webpages and journal articles.
QuPath extension to run StarDist nucleus detection
an extension that wraps a Cellpose environment such that WSI can be analyzed using Cellpose through QuPath.
Experimental design framework for scRNAseq population studies (eQTL and DE)
R implementation of the Reshef and Rumker CNA method (https://github.com/immunogenomics/cna)
Covarying neighborhood analysis (CNA) is a method for finding structure in- and conducting association analysis with multi-sample single-cell datasets.
Quantifying experimental perturbations at single cell resolution
The ultimate LLM prompt: extract the best possible answers with the highest fidelity and lowest error rates
Functions and scripts for processing RNA MERFISH data
Plugin to show if references in Zotero have PubPeer comments
Zotero plugin for auto-fetching citation counts from various sources
