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For tool creators to share their inventions that analyze, visualize, and make meaning of microbiome data.

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#Using the uBiome Tools Repository

Please add your tools here, and edit this file to keep a directory of scripts, programs, templates, or anything else you find useful for manipulating or analyzing uBiome information.

ubiomeCompare.py: simple scripts in Python If you have a Mac, this is the easiest script to run. You won't need to install anything new besides the script. Just follow the instructions.

RuBiome: simple scripts in R

  • uBiome_compare_samples Given two samples, output all the differences, including the difference in count_norm

  • uBiome_sample_unique Given two samples, output which rows are the uniquely found in one but not the other.

  • convert_json_files_to_csv Convert all JSON files in a directory to CSV files, suitable for reading in Excel or use with the other functions here.

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For tool creators to share their inventions that analyze, visualize, and make meaning of microbiome data.

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