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Commits on Feb 10, 2016

• small note to README #vc

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• add missing analysis from personalized simulation #vc

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• update to latest submission #vc

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Commits on Sep 29, 2015

• add in parallel organ analysis

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• update plots

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Commits on Jul 15, 2015

• bias analysis completed

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• add script to count reads from eXpress simulations

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  8926f7e

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• add bias/error results from eXpress paper

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• add bias and error analysis

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Commits on May 14, 2015

• shredding

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• filter by min TPM

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• Merge branch 'master' of github.com:pachterlab/kallisto_paper_analysis

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• updates to plots and eff lens

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  baa8900

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• fix typos in README

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• remove geuvadis from README

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  f83e8f5

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• cleanup figures

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• update README

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• update gitignore

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• remove geuvadis

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  6cb0828

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• Added versions

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• BAM comparison added

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• add ASE sim

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• Merge branch 'master' of bitbucket.org:hpimentel/kallisto_paper_analysis

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• add version info

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• added a .gitignore file

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• Merge branch 'master' of bitbucket.org:hpimentel/kallisto_paper_analysis

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• add bootstrap analysis and update README

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  f2a408b

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• clean up plots. add kallisto soft

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Commits on May 13, 2015

• add shredding snakefile

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• add SEQC info about samples

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  e7a1ad3

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• add seqc

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  af69ff6

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• updated snakefile

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Commits on May 9, 2015

• many updated changes to snakefiles and R script

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Commits on May 2, 2015

• load all simulation results

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Commits on Apr 29, 2015

• basic plots for analysis

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