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    43 repositories

    • argolid

      Public
      C++
      •
      MIT License
      •3•0•0•1•Updated Oct 10, 2024Oct 10, 2024

    • workflow-inference-compiler

      Public
      A domain specific language for creating scientific pipelines
      Python
      •
      MIT License
      •14•15•2•5•Updated Oct 9, 2024Oct 9, 2024

    • mm-workflows

      Public
      Molecular modeling workflows and extensions for workflow inference compiler
      Common Workflow Language
      •
      MIT License
      •12•6•0•8•Updated Oct 7, 2024Oct 7, 2024

    • bfio

      Public
      Interface to the Bioformats Java library
      image-processingimage-ionapari-plugin
      Python
      •
      MIT License
      •8•11•0•1•Updated Oct 4, 2024Oct 4, 2024

    • nyxus

      Public
      A fully scalable robust image feature extraction library.
      C++
      •
      MIT License
      •8•19•2•4•Updated Sep 30, 2024Sep 30, 2024

    • jupyterlab-extensions

      Public
      Python
      •5•2•9•7•Updated Sep 12, 2024Sep 12, 2024

    • academic-rag

      Public
      MIT License
      •7•1•0•3•Updated Sep 3, 2024Sep 3, 2024

    • NVM-R-TTE

      Public
      Python
      •
      MIT License
      •0•0•0•0•Updated Aug 30, 2024Aug 30, 2024

    • image-tools

      Public
      Python
      •
      MIT License
      •39•7•15•16•Updated Aug 29, 2024Aug 29, 2024

    • bfiocpp

      Public
      C++
      •
      MIT License
      •3•2•0•0•Updated Aug 27, 2024Aug 27, 2024

    • tabular-tools

      Public
      Python
      •
      MIT License
      •3•1•0•3•Updated Aug 16, 2024Aug 16, 2024

    • microjson

      Public
      Python
      •
      MIT License
      •4•7•0•5•Updated Aug 15, 2024Aug 15, 2024

    • tools-templates

      Public
      Python
      •
      MIT License
      •2•0•0•0•Updated Aug 15, 2024Aug 15, 2024

    • image-workflows

      Public
      Common Workflow Language
      •
      MIT License
      •6•0•0•7•Updated Aug 15, 2024Aug 15, 2024

    • .github

      Public
      PolusAI Profile
      0•0•0•0•Updated Aug 14, 2024Aug 14, 2024

    • mm-tools

      Public
      Python
      •
      MIT License
      •3•0•0•35•Updated Aug 12, 2024Aug 12, 2024

    • tools

      Public
      Python
      •
      MIT License
      •0•0•2•2•Updated Aug 12, 2024Aug 12, 2024

    • filepattern

      Public
      Utility to extract metadata from a file name.
      Python
      •
      MIT License
      •7•4•0•0•Updated Jul 11, 2024Jul 11, 2024

    • napari-nyxus

      Public
      Python
      •
      MIT License
      •2•4•1•0•Updated Jun 12, 2024Jun 12, 2024

    • jhsingle-native-proxy

      Public
      Wrap an arbitrary webapp so it can be used in place of jupyter-singleuser in a JupyterHub setting
      Python
      •
      Apache License 2.0
      •25•0•0•1•Updated Feb 9, 2024Feb 9, 2024

    • theia

      Public
      A scalable deep learning based bleed through correction algorithm.
      Python
      •
      MIT License
      •3•0•0•0•Updated Feb 2, 2024Feb 2, 2024

    • widget-ts-cookiecutter

      Public
      A highly opinionated cookiecutter template for ipywidget extensions.
      Python
      •
      BSD 3-Clause "New" or "Revised" License
      •55•0•0•0•Updated Jan 30, 2024Jan 30, 2024

    • examples

      Public
      Jupyter Notebook
      •
      MIT License
      •9•0•0•5•Updated Jan 11, 2024Jan 11, 2024

    • rshiny-server-cmd

      Public
      Command line wrapper to run a named R Shiny Server script/folder
      Python
      •
      Apache License 2.0
      •5•0•0•0•Updated Dec 29, 2023Dec 29, 2023

    • WIPP-frontend

      Public
      Web Image Processing Pipeline (WIPP) - frontend
      TypeScript
      •
      Other
      •13•0•0•16•Updated Nov 28, 2023Nov 28, 2023

    • jupyter-server-proxy

      Public
      Jupyter notebook server extension to proxy web services.
      Python
      •
      BSD 3-Clause "New" or "Revised" License
      •148•0•0•1•Updated Oct 12, 2023Oct 12, 2023

    • napari-bfio

      Public
      bfio plugin for napari
      Python
      •
      MIT License
      •2•1•0•0•Updated Sep 25, 2023Sep 25, 2023

    • sos-java

      Public
      Python
      •
      MIT License
      •0•1•0•1•Updated Jul 21, 2023Jul 21, 2023

    • viv

      Public
      Library for multiscale visualization of high-resolution multiplexed bioimaging data on the web. Directly renders Zarr and OME-TIFF.
      JavaScript
      •
      MIT License
      •42•1•0•9•Updated Jul 19, 2023Jul 19, 2023

    • jupyterlab-git

      Public
      A Git extension for JupyterLab
      TypeScript
      •
      BSD 3-Clause "New" or "Revised" License
      •313•0•0•6•Updated Jul 19, 2023Jul 19, 2023